DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Gria3

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001268858.2 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:680 Identity:110/680 - (16%)
Similarity:225/680 - (33%) Gaps:195/680 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RFTRAYNLMLVHAFHLSSPADQIQEGFSKLINEAVTNPGPPDREELFQMRVASD---YNITNGTE 132
            :.:|.|:.||.:........:::..|.:.:....:.|...|..::..|..|..|   :.......
Mouse   232 KHSRGYHYMLANLGFTDIVLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAP 296

  Fly   133 DKGELILADNYVIVVDSVDRLKELMKKKI-VEMRS------------WNPGARFLVLFHNATCRN 184
            .|....|..:.::|:  .:..:.|.:::: |..|.            |:.|    :....|....
Mouse   297 LKYTSALTHDAILVI--AEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQG----IDIERALKMV 355

  Fly   185 RPLGVASNIFKDLMEMFYVHRVALLYANSTMNYNLLVNDYYSNVNCRILNVQSVGQCHDGKLYPN 249
            :..|:..||..|            .|...| ||.:   |.|   ..::...:..|..::.:.:  
Mouse   356 QVQGMTGNIQFD------------TYGRRT-NYTI---DVY---EMKVSGSRKAGYWNEYERF-- 399

  Fly   250 NAVVKASMQDYVSGFSPRNCTFFACSSISAPFV---------------EADCI-LGLEMRILGFM 298
              |..:..|......|..|.|....:.:.:|:|               |..|: |..|:     .
Mouse   400 --VPFSDQQISNDSSSSENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEI-----A 457

  Fly   299 KN-RLKFDVNQTCSLESRGEMDG--PAN--WTGLLGKVQNNECDFVFGGYYP------DNEVADH 352
            |: |:|:.:    |:...|:...  |..  |.|::|::.....|....   |      ..||.|.
Mouse   458 KHVRIKYKL----SIVGDGKYGARDPETKIWNGMVGELVYGRADIAVA---PLTITLVREEVIDF 515

  Fly   353 FWGSDTYLQDAHTWYIKMADR-RPA------------WQALVGIFEAYTWIGFILILIISWLF-- 402
               |..::....:..||...: :|.            |..:|     :.:||..::|.:...|  
Mouse   516 ---SKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV-----FAYIGVSVVLFLVSRFSP 572

  Fly   403 --WFTLVMILPEPKYYQQ-----LSLTAINALAVTISIAVQE----RPICETTRLFFMALTLYGL 456
              |. |.....||:..|.     ......|:|..::...:|:    .|...:.|:.......:.|
Mouse   573 YEWH-LEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTL 636

  Fly   457 NVVATYTS---------KMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFEND-----DD 507
            .::::||:         :|::..:.   ...|.:.||:....:..|   .::::|...     :.
Mouse   637 IIISSYTANLAAFLTVERMVSPIES---AEDLAKQTEIAYGTLDSG---STKEFFRRSKIAVYEK 695

  Fly   508 MWIF--------------NGY---------------NISPEFIPQSKNLEAVKWGQRCILSNRMY 543
            ||.:              :|.               :...|:|.|.|..:.:|.|..  |.::.|
Mouse   696 MWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGN--LDSKGY 758

  Fly   544 TMQSPLADVIYAFPNNVFSSPVQMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNR 608
            .:.:|        ..:...:||.:             ::::| .:.||..|:...:.|:.   ..
Mouse   759 GVATP--------KGSALRTPVNL-------------AVLKL-SEQGILDKLKNKWWYDK---GE 798

  Fly   609 INKMRPQFPETAIVLTTEHLKGPFFILVVG 638
            .........:....|:..::.|.|:|||.|
Mouse   799 CGAKDSGSKDKTSALSLSNVAGVFYILVGG 828

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Gria3NP_001268858.2 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610 31/199 (16%)
PBP2_iGluR_AMPA 416..799 CDD:270433 70/436 (16%)
Glutamate binding 502..504 1/1 (100%)