DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Gria1

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:542 Identity:99/542 - (18%)
Similarity:176/542 - (32%) Gaps:182/542 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IVNLSNETANTVIFMLPEKDLGPDVWKAGVGCLDSFAQIFFFRNPKERFTRAYNLMLVHAFHLSS 88
            :|:..:|..|.::..:.:.:      |.|:|                     |:.:|.:...:..
  Rat   201 VVDCESERLNAILGQIVKLE------KNGIG---------------------YHYILANLGFMDI 238

  Fly    89 PADQIQE------GFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYVIVV 147
            ..::.:|      || :|:|...|.|.    ..:.|.|.:...:.|.....:.:...|..|..|.
  Rat   239 DLNKFKESGANVTGF-QLVNYTDTIPA----RIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVK 298

  Fly   148 DSVDRLKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEMFYVHRVALLYAN 212
            ...:..:.|.:::|...|..|.|.   .|.:.|.    |.|...:|.:.|.::.:......:..|
  Rat   299 VMAEAFQSLRRQRIDISRRGNAGD---CLANPAV----PWGQGIDIQRALQQVRFEGLTGNVQFN 356

  Fly   213 S---TMNYNLLVNDYYSNVNCRILNVQSVGQCH-DGKLYPNNAVVKASMQDYVSGFSPRNCTFFA 273
            .   ..||.|.|      :..:...::.:|..: |.|..|.....:|...:    .|.:|.|:..
  Rat   357 EKGRRTNYTLHV------IEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDN----SSVQNRTYIV 411

  Fly   274 CSSISAPFVEADCILGLEMRILGFMKNRLKFDVNQTCSLESRGEMDGPANWTGLLGKVQNNECDF 338
            .:.:..|:|                  .||.:.||         .:|...:.|...::.......
  Rat   412 TTILEDPYV------------------MLKKNANQ---------FEGNDRYEGYCVELAAEIAKH 449

  Fly   339 VFGGY-YPDNEVADHFWGSDTYLQDAHTWYIKMADRRPAWQALVGIFEAYTWIGFILILIISWLF 402
            |  || |....|:|..:|:    :|..|         .||..:||                ..::
  Rat   450 V--GYSYRLEIVSDGKYGA----RDPDT---------KAWNGMVG----------------ELVY 483

  Fly   403 WFTLVMILPEPKYYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKMI 467
            ....|.:.|       |::|.:....:..|     :|        ||:|   |::::.....|  
  Rat   484 GRADVAVAP-------LTITLVREEVIDFS-----KP--------FMSL---GISIMIKKPQK-- 523

  Fly   468 ATFQDPGYLHQLDELTE-----VVAAGI-------------PFGGH----EESRDWFEND--DDM 508
               ..||....||.|..     :|.|.|             |:..|    ||.||...:|  ::.
  Rat   524 ---SKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEF 585

  Fly   509 WIFN------------GYNISP 518
            .|||            |.:|||
  Rat   586 GIFNSLWFSLGAFMQQGCDISP 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613 41/235 (17%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 56/288 (19%)
Glutamate binding. /evidence=ECO:0000250 492..494 1/8 (13%)
Glutamate binding. /evidence=ECO:0000250 668..669
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349970
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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