DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grid2

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:653 Identity:124/653 - (18%)
Similarity:226/653 - (34%) Gaps:156/653 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 INEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYVIVVDSVDRLKELMKKKIVEMR 165
            ||.::.:|..|..:.|         .|||            .|  :.|:|..|.....:|: |.|
Zfish   305 INTSLCDPKDPKAQML---------EITN------------RY--IYDTVLLLANTFHRKL-EDR 345

  Fly   166 SWNPGARFLVLFHNATC---RNRPLGVASNIFKDLMEMFYVHRVALLY-----ANSTMNYNLLVN 222
            .|:..|       :.:|   .::|.....::.:.:.:.......:||.     :|..:::.:|..
Zfish   346 KWHSMA-------SLSCIRKGSKPWQGGKSMLETVKKGGVSGLTSLLEFNDNGSNPNIHFEILGT 403

  Fly   223 DYYSNVNCRILNVQSVGQCHDGKLYPNNAVVKASMQDYVSGFSPRNCTFFACSSISAPFV-EADC 286
            :|..:....:..:.:....|.    .|..:....:::.:.|...|..|.     :..||| .::.
Zfish   404 NYGEDRGRGVSRLATWDPIHG----LNGTLTDRKLENNMRGVVLRVVTV-----LEEPFVMVSEN 459

  Fly   287 ILGLEMRILGF-------MKNRLKFDVNQTCSLESR-GEMDGPANWTGLLGKVQNNECDFVFGG- 342
            :||...:..||       :.|.|.|......:.:.: |.......|.||:|::.....|..... 
Zfish   460 VLGKPKKYQGFSIDVLDALANYLGFKYEIYVAPDHKYGSQQADGTWNGLIGELVFKRADVGLSAL 524

  Fly   343 -YYPDNEVADHFWGSDTYLQDAHTWYIKMADRRPAWQALVGIFEAYTW---IGFILILIISWLFW 403
             ..|:.|....|  :..|:..:....::.|:|.....|.:..|:...|   .|.:|::       
Zfish   525 TITPERESVVDF--TTRYMDYSVGVLLRKAERTVDMFACLAPFDLSLWACIAGTVLLV------- 580

  Fly   404 FTLVMIL-----PEPKYYQQLSLTAINALAVTISIAVQ---ERPICE-TTRLFFMALTLYGLNVV 459
            .|||.:|     |........|.|..|::.......||   |.|... .||:......|:.|.|:
Zfish   581 GTLVYLLNWLNPPRLPMGSVSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVI 645

  Fly   460 ATYTSKMIATFQDPGYLHQLDELTEVV-AAGIPFGGHEESRDW----------FEND---DDMW- 509
            ::||:.:.|........:.:..|.::. ...:|:|...:|..:          ||.|   ..|| 
Zfish   646 SSYTANLAAFLTISRIENSIQSLQDLAKQTDLPYGTVLDSAVYDQVRSKGMNPFERDPMYSQMWR 710

  Fly   510 IFNGYNISPEFIPQSK-NLEAVKWGQRCILSNRMYTMQSPLAD---VIYAFPNNVFSSPVQMIMK 570
            :.|....:...:.:|| .:..||:|:...:.:........:.|   .:|...|||......|.|:
Zfish   711 MINRTGGAENNVEESKEGIRKVKYGRFAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQ 775

  Fly   571 AGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFP--------------ETAI 621
            .|.|:           ||  ||.:...:.:.|...  .|.|:: .:|              ::..
Zfish   776 HGSPY-----------RD--IFSQRILELQQNGDM--DILKLK-WWPRDSPCDLYSPVGTRKSGS 824

  Fly   622 VLTTEHLKGPFFILVVG---SCWAALTFIGELIIHRWRTQLVSTSEQQDRRSDKRRRRRRRRKPE 683
            .|......|.||:|..|   ||..|       .:..|.|                 ||:..|.|.
Zfish   825 ALDIHSFAGVFFVLAAGVVLSCLIA-------TVETWWT-----------------RRKGSRVPS 865

  Fly   684 KDN 686
            |::
Zfish   866 KED 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 25/156 (16%)
ANF_receptor 42..404 CDD:279440 23/129 (18%)
PBP2_iGluR_delta_2 440..806 CDD:270449 81/395 (21%)
Lig_chan 568..841 CDD:278489 60/295 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591512
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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