DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grik

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster


Alignment Length:679 Identity:120/679 - (17%)
Similarity:221/679 - (32%) Gaps:219/679 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 VHAFHLSSP-ADQIQEGFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYV 144
            :....|.|| ::|:|| .:|.:.|:         ||.||       |::        ..|.::..
  Fly   264 ITGLRLVSPDSEQVQE-VAKALYES---------EEPFQ-------NVS--------CPLTNSMA 303

  Fly   145 IVVDSVDRLKELMKKKIVEMR----------SWNPGARFLVLFHNATCRNRPLGVASNIFKDLME 199
            :|.|.|..|.|..|.  |..|          :|:.|...:....:.|..    |:...|..|   
  Fly   304 LVYDGVQLLAETYKH--VNFRPVALSCNDDSAWDKGYTLVNYMKSLTLN----GLTGPIRFD--- 359

  Fly   200 MFYVHRVALLYANSTMNYNLLVNDYYSNVNCRILNVQSVGQCHDGKLYPNNAVVKA-----SMQD 259
                      |.....::.|.|      :...:..:|.:||......:..|....|     .|:.
  Fly   360 ----------YEGLRTDFKLEV------IELAVSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRS 408

  Fly   260 YVSGFSPRNCTFFACSSISAPF---------VEA-DCILGLEMRILGFMKNRLKFDVNQTCSLES 314
            .|      |.:|...::||.|:         :|. |...|..:.::..:..:|.|  :.|..|:.
  Fly   409 LV------NKSFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDELSKKLGF--SYTWRLQE 465

  Fly   315 RGEMDG----PANWTGLLGKVQNNECDFVFGGYYPDNEVADHFWGSDTYLQDAHTWYIKMADRRP 375
            ..:..|    ...|.|:|.::.::..|.   |.......::...|.|..:              |
  Fly   466 DNKYGGIDPKTGEWNGMLREIIDSRADM---GITDLTMTSERESGVDFTI--------------P 513

  Fly   376 AWQALVGIF--------------------EAYTWIGFILILIISWLF---------WFTLVMILP 411
            .....:||.                    |.:.|:|...:.:...:|         |......:.
  Fly   514 FMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIE 578

  Fly   412 EP-KYYQQLSLTAINALAVTISIAVQE----RPICETTRLFFMALTLYGLNVVATYTSKMIA--- 468
            || :...|.|..  |.|..:|...:|:    .|...:||....:...:.|.:|::||:.:.|   
  Fly   579 EPTELENQFSFA--NCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLT 641

  Fly   469 --TFQDPGYLHQLDELTE---VVAAGIPFGG-----------------HEESRD---WFENDDDM 508
              :...|  ::..|:|::   .|..|...||                 :|..||   :..|.:..
  Fly   642 VESLVTP--INDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQE 704

  Fly   509 WIFNGYNISPEFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFPNNVFSSPVQMIMKAGF 573
            .:....|.:..|:.:|..:|.:. .:||.|     |....|.|          .....:.|:..:
  Fly   705 GVDRVENSNYAFLMESTTIEYIT-ERRCTL-----TQVGALLD----------EKGYGIAMRKNW 753

  Fly   574 PFLFEMNSIIRLMRDVGIFQKI---------------DADFRYNNTYLNRINKMRPQFPETAIVL 623
            |:...::..:..|::.|:..|:               |||                 ....|:.|
  Fly   754 PYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDAD-----------------EDSGAVAL 801

  Fly   624 TTEHLKGPFFILVVGSCWAALTFIGELII 652
            ...:|.|.|.::.|||.:.....:.|:::
  Fly   802 EISNLGGVFLVMGVGSFFGIFVSLLEMVL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 34/176 (19%)
ANF_receptor 53..374 CDD:279440 31/159 (19%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 70/408 (17%)
Lig_chan 543..816 CDD:278489 55/309 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462828
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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