DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and gria3b

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:530 Identity:84/530 - (15%)
Similarity:160/530 - (30%) Gaps:196/530 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 SPRNCTFFACSSISAPFVEADCILGLEMRILGFMKNRLKFDVNQT----CSLESRGE-------- 317
            |..|.|....:.:.||:|.             :.||.:..:.|:.    | ::...|        
Zfish   409 SVENRTIVVTTIMEAPYVM-------------YKKNHMHLEGNEKYEGYC-VDLASEIAKHVGIK 459

  Fly   318 ------MDG--------PANWTGLLGKVQNNECDFVFGGYYP------DNEVADHFWGSDTYLQD 362
                  |||        ..:|.|::|::.....|....   |      ..||.|.   |..::..
Zfish   460 YRLSIVMDGKYGARDPETKSWNGMVGELVYGRADIAVA---PLTITLVREEVIDF---SKPFMSL 518

  Fly   363 AHTWYIKMADR-RPA------------WQALVGIFEAYTWIGFILILIISWLFWFTLVMILPEPK 414
            ..:..||...: :|.            |..:|     :.:||..::|.:...|          ..
Zfish   519 GISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV-----FAYIGVSVVLFLVSRF----------SP 568

  Fly   415 YYQQLSLT-----------------AINALAVTISIAVQE----RPICETTRLFFMALTLYGLNV 458
            |..||..|                 ..|:|..::...:|:    .|...:.|:.......:.|.:
Zfish   569 YEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 633

  Fly   459 VATYTS---------KMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFEND-----DDMW 509
            :::||:         :|::..:.   ...|.:.||:....:..|   .::::|...     :.||
Zfish   634 ISSYTANLAAFLTVERMVSPIES---AEDLAKQTEIAYGTLDSG---STKEFFRRSKIAVYEKMW 692

  Fly   510 IF--------------NGY---------------NISPEFIPQSKNLEAVKWGQRCILSNRMYTM 545
            .:              :|.               :...|:|.|.|..:.:|.|..  |.::.|.:
Zfish   693 SYMKSAEPSVFAKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGN--LDSKGYGV 755

  Fly   546 QSPLADVIYAFPNNVFSSPVQMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRIN 610
            .:|...   |..|.|                   |..:..:.:.|:..|:...:.|:.   ....
Zfish   756 ATPKGS---ALRNAV-------------------NLAVLKLNEQGLLDKLKNKWWYDK---GECG 795

  Fly   611 KMRPQFPETAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQLVSTSEQQDRRSDKRRR 675
            .......:....|:..::.|.|:|||.|...|.:..:.|...                   |.|.
Zfish   796 SGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCY-------------------KSRA 841

  Fly   676 RRRRRKPEKD 685
            ..:|.|.||:
Zfish   842 EAKRLKLEKN 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_type1 25..398 CDD:471960
PBP2_iGluR_AMPA 412..794 CDD:270433 68/449 (15%)
Blue background indicates that the domain is not in the aligned region.

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