DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Nmdar2

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:661 Identity:134/661 - (20%)
Similarity:231/661 - (34%) Gaps:167/661 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 NLMLVHAF----HLSSPADQIQEGFSKLINEAVTNPGPPDREELF-----QMRVASDYNITN--G 130
            |.:.::::    :|:.||::.:...::.::......|..|..|:|     .:.:..|.|..|  .
  Fly   376 NAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSIEGDLNKPNIEF 440

  Fly   131 TEDKGELILADNYVIVVDSVDRLKELMKKKIVEMRSWN-----------PGARFLVLFHNATCRN 184
            |.| |:|..|:..::.:......|.|:.::|...:||.           ||          ....
  Fly   441 TAD-GDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPG----------NSHA 494

  Fly   185 RPLGVASNIFKDLMEMFYVHRVALLYANSTMNYNLLVNDYYS-------NVNCRILNVQ------ 236
            .|.||.        |.|:   :.:.:.......||...|..|       .|.||:....      
  Fly   495 PPQGVP--------EKFH---LKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAADI 548

  Fly   237 SVGQCHDGKLYPNNAVVKASMQDYVSGFSPRNCTFFACSSISAPFVEADCILGLE--MRILGFMK 299
            .|||.|                        ||.:|:.|.|       ..||..||  ...|||..
  Fly   549 DVGQAH------------------------RNESFYQCCS-------GFCIDLLEKFAEELGFTY 582

  Fly   300 NRLKFDVNQTCSLESRGEMDGPANWTGLLGKVQNNECDFVFGGYYPDNE---VADHFWGSDTYLQ 361
            ..::.:..:..:||:       ..|.||:..:.|.:.|.|......:.|   |.|.   |:.:::
  Fly   583 ELVRVEDGKWGTLEN-------GKWNGLIADLVNRKTDMVLTSLMINTEREAVVDF---SEPFME 637

  Fly   362 D-------------AHTWYIKMADRRPAWQALVGI--FEAYTWIGFILILIISWLFWFTLVMILP 411
            .             :.|.:::..| ..:|. ||||  .:|.|:    :|.:..||......|.| 
  Fly   638 TGIAIVVAKRTGIISPTAFLEPFD-TASWM-LVGIVAIQAATF----MIFLFEWLSPSGYDMKL- 695

  Fly   412 EPKYYQQLSLTAIN---------ALAVTISIAVQ-ERPICETTRLFFMALTLYGLNVVATYTSKM 466
               |.|..::|...         ..||....||. :.|...|:|.......|:.:..:|.||:.:
  Fly   696 ---YLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANL 757

  Fly   467 IATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFE------NDDDMWIFNGYNISPEFIPQSK 525
            .|........|:...|.:..... || .|:.|   |:      :..|..|...:|:...::.| .
  Fly   758 AAFMITREEFHEFSGLNDSRLVH-PF-SHKPS---FKFGTIPYSHTDSTIHKYFNVMHNYMRQ-Y 816

  Fly   526 NLEAVKWGQRCILSNRM--YTMQSPLADVIYAFPNNVFSSPV-QMIMKAGFPFLFEMNSIIRLMR 587
            |..:|..|...:|:..:  :.....:.|.:.|...:.....| ......|:...|..||     :
  Fly   817 NKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNS-----K 876

  Fly   588 DVGIFQKIDADFRYNNTYLNRINK------MRP--QFPETAIVLTTEHLKGPFFILVVGSCWAAL 644
            .|.:|.|...:||.|.. |.|:.:      .||  |..:::..|..|.....|.:|:.|...|||
  Fly   877 YVQMFNKRLLEFRANGD-LERLRRYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAAL 940

  Fly   645 TFIGELIIHRW 655
            ..:.|.:..::
  Fly   941 LLLLEHVYFKY 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 21/114 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 95/471 (20%)
Lig_chan 665..928 CDD:278489 62/283 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463000
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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