DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grik3

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:865 Identity:153/865 - (17%)
Similarity:283/865 - (32%) Gaps:315/865 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 TRAYNLMLVHAFHLSSPA-----DQIQEGFSKLIN----------EAVTNP------------GP 110
            |..|::..:| ||.|..|     ||:..|...:..          :::.|.            .|
  Rat    78 TLTYDIQRIH-FHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHP 141

  Fly   111 PDREELFQMRVASDY-NITNGTEDKGELILADNYVIVVD---SVDRLKEL--------MKKKIVE 163
            .|.::.|.:.:..|| ::::...|..:.:...:..:|.|   .:.||:||        ::.||.:
  Rat   142 LDNKDTFYVNLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQ 206

  Fly   164 -----------MRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEM----FYVHRVALLYANS 213
                       ::....|..|.::|   .|.:.   :|:.|.|..|.|    .|.|     :..:
  Rat   207 LPIDSDDSRPLLKEMKRGREFRIIF---DCSHT---MAAQILKQAMAMGMMTEYYH-----FIFT 260

  Fly   214 TMN-YNLLVNDY-YSNVNC---RILNVQSVG---------------------------------- 239
            |:: |.|.:..| ||.||.   |||||.:..                                  
  Rat   261 TLDLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAAL 325

  Fly   240 -----------------------QCHDGKLYP-----NNAVVKASMQ------------------ 258
                                   |||..|.:.     .|.:.:|..:                  
  Rat   326 LYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDF 390

  Fly   259 --DYVS-------------------------GFSPR------NCTFFACSSISAPFV-------- 282
              |.:|                         |..|.      |.:....:.:..|||        
  Rat   391 DLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTNRSLIVTTLLEEPFVMFRKSDRT 455

  Fly   283 -------EADCILGLE--MRILGFMKNRLKFDVNQTCSLESR-------GEMDGPANWTGLLGKV 331
                   |..||..|:  ..||||             |.|.|       |..|....|.|::.::
  Rat   456 LYGNDRFEGYCIDLLKELAHILGF-------------SYEIRLVEDGKYGAQDDKGQWNGMVKEL 507

  Fly   332 QNNECDFVFGGYYPDN--EVADHFWGSDTYLQDAHTWYIKMADRRP-----------------AW 377
            .:::.|.........:  |.|..|  |..::    |..:.:..|:|                 .|
  Rat   508 IDHKADLAVAPLTITHVREKAIDF--SKPFM----TLGVSILYRKPNGTNPSVFSFLNPLSPDIW 566

  Fly   378 QALVGIFEAYTWIGFILILI--ISWLFWFTLVMILPEPKYYQQLSLTAINALAVTISIAVQE--- 437
               :.:..||..:..:|.:|  .|...|:......|..:..:. :.|.:|:....:...:|:   
  Rat   567 ---MYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVEN-NFTLLNSFWFGMGSLMQQGSE 627

  Fly   438 -RPICETTRLFFMALTLYGLNVVATYTSKMIA-----TFQDPGYLHQLDELTEVVAAGIPFGGHE 496
             .|...:||:.......:.|.::::||:.:.|     ..:.|  :...|:|.:  ...|.:|..:
  Rat   628 LMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESP--IDSADDLAK--QTKIEYGAVK 688

  Fly   497 E--SRDWFEND-----DDMWIFNGYNISPEFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIY 554
            :  :..:|:..     :.||.|  .:..|..:.:: |.|.:   ||.:.::....|:|  ..:.|
  Rat   689 DGATMTFFKKSKISTFEKMWAF--MSSKPSALVKN-NEEGI---QRTLTADYALLMES--TTIEY 745

  Fly   555 AFPNNVFSSPV-QMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQF-- 616
            ....|...:.: .:|...|:.....|.|..|....:.|.|..:.|         :::.|:.::  
  Rat   746 ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEED---------KLHIMKEKWWR 801

  Fly   617 ----PE----TAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQLVSTSEQQDRR---- 669
                ||    .|..|..:.:.|.|.:|..|...:.|..:||.|.     :|..|:|::.|.    
  Rat   802 GSGCPEEENKEASALGIQKIGGIFIVLAAGLVLSVLVAVGEFIY-----KLRKTAEREQRSFCST 861

  Fly   670 -SDKRR-----RRRRRRKPE 683
             :|:.|     :||.:.||:
  Rat   862 VADEIRFSLTCQRRLKHKPQ 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grik3NP_001106187.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 57/350 (16%)
ANF_receptor 55..398 CDD:279440 57/331 (17%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 72/411 (18%)
Lig_chan 564..832 CDD:278489 52/292 (18%)
Glutamate binding 690..692 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350090
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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