DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Gria3

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_116785.2 Gene:Gria3 / 29628 RGDID:70958 Length:888 Species:Rattus norvegicus


Alignment Length:250 Identity:50/250 - (20%)
Similarity:92/250 - (36%) Gaps:55/250 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   397 IISWLFW-FTLVMILPEPKYYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYG-LNVV 459
            |:..::| |||::|         .|.||..|..:|:...|.  ||.....|.......|| |:..
  Rat   626 IVGGVWWFFTLIII---------SSYTANLAAFLTVERMVS--PIESAEDLAKQTEIAYGTLDSG 679

  Fly   460 AT---YTSKMIATFQDP-GYLHQLDE--LTEVVAAGIPFGGHEESRDWFENDDDMWIFNGYNISP 518
            :|   :....||.::.. .|:...:.  .|:..|.|:......:.:..|..:..|         .
  Rat   680 STKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTM---------N 735

  Fly   519 EFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFPNNVFSSPVQMIMKAGFPFLFEMNSII 583
            |:|.|.|..:.:|.|..  |.::.|.:.:|        ..:...:||.:             :::
  Rat   736 EYIEQRKPCDTMKVGGN--LDSKGYGVATP--------KGSALGTPVNL-------------AVL 777

  Fly   584 RLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVLTTEHLKGPFFILVVG 638
            :| .:.||..|:...:.|:.   ...........:....|:..::.|.|:|||.|
  Rat   778 KL-SEQGILDKLKNKWWYDK---GECGAKDSGSKDKTSALSLSNVAGVFYILVGG 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Gria3NP_116785.2 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610
PBP2_iGluR_AMPA 416..799 CDD:270433 43/219 (20%)
Blue background indicates that the domain is not in the aligned region.

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