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Protein Alignment Ir60a and Gria2

DIOPT Version :9

Sequence 1:	NP_611901.1	Gene:	Ir60a / 37881	FlyBaseID:	FBgn0034994	Length:	716	Species:	Drosophila melanogaster
Sequence 2:	NP_001077280.1	Gene:	Gria2 / 29627	RGDID:	61862	Length:	883	Species:	Rattus norvegicus

Alignment Length:	614	Identity:	102/614 - (16%)
Similarity:	199/614 - (32%)	Gaps:	187/614 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly   143 YVIVVDSVDRLKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEMFYVHRVA 207
            |..|....:..:.|.|::|...|..|.|.   .|.:.|.    |.|....|.:.|.::    :|.
  Rat   301 YDAVQVMTEAFRNLRKQRIEISRRGNAGD---CLANPAV----PWGQGVEIERALKQV----QVE 354

  Fly   208 LLYAN-------STMNYNLLVND----------YYSNVNCRILNVQSVGQCHDGKLYPNNAVVKA 255
            .|..|       ..:||.:.:.:          |:|.|:..::.:..:...:|.....|..||..
  Rat   355 GLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVT 419

  Fly   256 SMQDYVSGFSPRNCTFFACSSISAPFV----EADCILGLEMRILGFMKNRLKFDVNQTCSLESR- 315
            ::                   :.:|:|    ..:.:.|.| |..|:..: |..::.:.|..:.:
  Rat   420 TI-------------------LESPYVMMKKNHEMLEGNE-RYEGYCVD-LAAEIAKHCGFKYKL 463

  Fly   316 --------GEMDGPAN-WTGLLGKVQNNECDFVFGGYYP------DNEVADHFWGSDTYLQDAHT 365
                    |..|.... |.|::|::...:.|....   |      ..||.|.   |..::....:
  Rat   464 TIVGDGKYGARDADTKIWNGMVGELVYGKADIAIA---PLTITLVREEVIDF---SKPFMSLGIS 522

  Fly   366 WYIKMADR-RPA------------WQALVGIFEAYTWIGFILILIISWLF----WFTLVMILPEP 413
            ..||...: :|.            |..:|     :.:||..::|.:...|    |.|  ....:.
  Rat   523 IMIKKPQKSKPGVFSFLDPLAYEIWMCIV-----FAYIGVSVVLFLVSRFSPYEWHT--EEFEDG 580

  Fly   414 KYYQQLSLT----AINALAVTISIAVQERPICETT------RLFFMALTLYGLNVVATYTS---- 464
            :..|....|    ..|:|  ..|:....|..|:.:      |:.......:.|.::::||:
  Rat   581 RETQSSESTNEFGIFNSL--WFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 643

  Fly   465 -----KMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFEND-----DDMWIF-------- 511
                 :|::..:.   ...|.:.||:....:..|   .::::|...     |.||.:
  Rat   644 FLTVERMVSPIES---AEDLSKQTEIAYGTLDSG---STKEFFRRSKIAVFDKMWTYMRSAEPSV 702

  Fly   512 ------------------NGYNISP---EFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYA 555
                              ..|.:..   |:|.|.|..:.:|.|..  |.::.|.:.:|....:
  Rat   703 FVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGN--LDSKGYGIATPKGSSL-- 763

  Fly   556 FPNNVFSSPVQMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETA 620
              .|.                  :|..:..:.:.|:..|:...:.|:.   ...........|..
  Rat   764 --GNA------------------VNLAVLKLNEQGLLDKLKNKWWYDK---GECGSGGGDSKEKT 805

  Fly   621 IVLTTEHLKGPFFILVVGSCWAALTFIGE 649
            ..|:..::.|.|:|||.|...|.|..:.|
  Rat   806 SALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.