DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grin2d

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:256 Identity:45/256 - (17%)
Similarity:82/256 - (32%) Gaps:75/256 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 APFVEADCILGLEMRILGFMKNRLKF--DVNQTCSLESRGEMDGPANWTGLLGKVQNNECDFVFG 341
            ||..|..|..|..:.||..:.:.:.|  |:....:.:...::||.  |.|::|:|.....|...|
  Rat   473 APRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGV--WNGMIGEVFYQRADMAIG 535

  Fly   342 GYYPDNEVADHFWGSDTYLQD-------------------AHTWYIKMADRRP----AWQAL--- 380
            ....:.|.::....|..:::.                   |..|........|    .|..:   
  Rat   536 SLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLAFAWLTPPMSPEPYSPAVWVMMFVM 600

  Fly   381 --------VGIFEAYTWIGFILILIIS--------------WLFWFTLVMILPEPKYYQQLSLTA 423
                    |.|||..:.:|:...|...              ||.|                    
  Rat   601 CLTVVAVTVFIFEYLSPVGYNRSLATGKRPGGSTFTIGKSIWLLW-------------------- 645

  Fly   424 INALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKMIATFQDPGYLHQLDELTE 484
              ||....|:.| |.|...|:::..:....:.:..:|:||:.:.|......|:..:..|::
  Rat   646 --ALVFNNSVPV-ENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSD 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 45/256 (18%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350086
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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