DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grin3b

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:512 Identity:104/512 - (20%)
Similarity:168/512 - (32%) Gaps:143/512 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 GQCHDGKL-----YPNNAVVKASMQDYVSGFSP---RNCTFFACSSISAPFVEADCILGLEMRIL 295
            |||..|:|     ..::|.:.|......:|..|   |.|.:..|..:.....| |.....|:.|:
Mouse   517 GQCPAGQLCLDPGTNDSARLDALFTALENGSVPRTLRRCCYGYCIDLLERLAE-DLAFDFELYIV 580

  Fly   296 GFMK-NRLKFDVNQTCSLESRGEMDGPANWTGLLGKVQNNECDFVFGGYYPD---NEVADH---F 353
            |..| ..|:               ||  .||||:|.:...........:..:   ::|.|.   |
Mouse   581 GDGKYGALR---------------DG--RWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPF 628

  Fly   354 WGSDTYLQ----------DAHTWYIKMADRRPAWQALVGIFEAYTWIGFILILIISWLFWFTLVM 408
            :.:...:.          .|..|.:.       |...||:|.|.    .:..|.::...|.:...
Mouse   629 FSTSLGIMVRTRDTASPIGAFMWPLH-------WSMWVGVFAAL----HLTALFLTLYEWRSPYG 682

  Fly   409 ILPEPK-------YYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKM 466
            :.|..:       |...|:|........|:|   .:.|.|.|.|.......::.|.|:::||:.:
Mouse   683 LTPRGRNRGTVFSYSSALNLCYAILFGRTVS---SKTPKCPTGRFLMNLWAIFCLLVLSSYTANL 744

  Fly   467 IA------TFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFENDDDMWIFNGYNISPEFIPQSK 525
            .|      ||::...:|  |......:.|..||     ..| |:..:.:|...:   ||.....:
Mouse   745 AAVMVGDKTFEELSGIH--DPKLHHPSQGFRFG-----TVW-ESSAEAYIKASF---PEMHAHMR 798

  Fly   526 NLEA--VKWGQRCILSN----RMYTMQSPLADVIYAFPNNVFSSPVQMIMKAGFPFLFE------ 578
            ...|  ...|...:.|:    ..:.|...|.|...:...:.      .::..|.||..|      
Mouse   799 RHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADC------KLLTVGKPFAIEGYGIGL 857

  Fly   579 ---------MNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVLTT-----EHLK 629
                     ::..|...:..|..     |..::..|     ||.|.......|..|     .||.
Mouse   858 PQNSPLTSNLSEFISRYKSSGFI-----DLLHDKWY-----KMVPCGKRVFAVTETLQMGVYHLS 912

  Fly   630 GPFFILVVGSCWAALTFIGELIIHR--------------WRTQLVSTSEQQDRRSDK 672
            |.|.:|.:|...|.||.:||.:.:|              |    :.||  |.||.||
Mouse   913 GLFVLLCLGLGSALLTSLGEHVFYRLVLPRIRRGNKLQYW----LHTS--QVRRQDK 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 78/424 (18%)
Lig_chan 654..921 CDD:459656 58/307 (19%)
Blue background indicates that the domain is not in the aligned region.

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