DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and gria2b

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:758 Identity:129/758 - (17%)
Similarity:243/758 - (32%) Gaps:229/758 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RFTRAYNLMLVHAFHLSSPADQIQEGFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKG 135
            |..:.|:.::.:...:.....:||.|.:.:....:.:...|...:..|...|.:.....|.:.|.
Zfish   227 RHVKGYHYIIANLGFVDGDLSKIQYGGANVSGFQIVDFDDPLVSKFDQRWEALEEKEYPGADSKI 291

  Fly   136 ELILADNYVIVVDSVDRLKELMKKKI-VEMRS------------WNPGARFLVLFHNATCRNRPL 187
            ....|..|..|....:..:.|.|::| :..|:            |..|    |....|..:.|..
Zfish   292 RYTSALTYDAVQVMTEAFRYLHKQRIDISRRANNGDCLANPAVPWAQG----VEIERALKQVRVD 352

  Fly   188 GVASNIFKDLMEMFYVHRVALLYANSTMNYNLLVND------YYSNVNCRILNVQSVGQCHDGKL 246
            |:..||..|.    |..||     |.|:|...|.::      |::.|:..::.        ...|
Zfish   353 GLTGNIQFDQ----YGKRV-----NYTVNVMELKSNGAVKIGYWNEVDKMVVT--------KSDL 400

  Fly   247 YPNNAVVKASMQDYVSGFSPRNCTFFACSSISAPFV----EADCILGLEMRILGFMKNRLKFDVN 307
            :||:.:            ...|.|....:.:.||:|    .||..:..| |..|:..: |..::.
Zfish   401 FPNDTM------------GLENKTVIVTTILEAPYVMLKKNADLFMDNE-RYEGYCVD-LAAEIA 451

  Fly   308 QTCSLESRGEMDGPAN----------WTGLLGKVQNNECDFVFGGYYP------DNEVADHFWGS 356
            :.|..:.:.::.|...          |.|::|::...:.|....   |      ..||.|.   |
Zfish   452 KHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVA---PLTITLVREEVIDF---S 510

  Fly   357 DTYLQDAHTWYIKMADR-RPA------------WQALVGIFEAYTWIGFILILIISWLF----WF 404
            ..::....:..||...: :|.            |..:|     :.:||..::|.:...|    |.
Zfish   511 KPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV-----FAYIGVSVVLFLVSRFSPYEWH 570

  Fly   405 TLVMILPEPKYYQQLSLTA---------INALAVTISIAVQERPICETT------RLFFMALTLY 454
            |        :.|:...:..         .|:|  ..|:....|..|:.:      |:.......:
Zfish   571 T--------EEYEDGQIQTNESTNEFGIFNSL--WFSLGAFMRQGCDISPRSLSGRIVGGVWWFF 625

  Fly   455 GLNVVATYTS---------KMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFEND----- 505
            .|.::::||:         :|::..:.   ...|.:.||:....:..|   .::::|...     
Zfish   626 TLIIISSYTANLAAFLTVERMVSPIES---AEDLAKQTEIAYGTLDSG---STKEFFRRSKIALF 684

  Fly   506 DDMWIF-NGYNIS----------------------------PEFIPQSKNLEAVKWGQRCILSNR 541
            |.||.: .|...|                            .|:|.|.|..:.:|.|..  |.::
Zfish   685 DKMWTYMKGAEPSVFVKTTAEGVMRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGN--LDSK 747

  Fly   542 MYTMQSPLADVIYAFPNNVFSSPVQMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYL 606
            .|.:.:|                      .|......:|..:..:.:.|:..|:...:.|:.   
Zfish   748 GYGIATP----------------------KGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDK--- 787

  Fly   607 NRINKMRPQFPETAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQLVSTSEQQDRR-- 669
            ...........|....|:..::.|.|:|||.|...|.|..:.|....       |.:|.:..:  
Zfish   788 GECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALVEFCYK-------SRAEAKRMKVT 845

  Fly   670 -SDKRRRRRRR------------RKPEKDNRWQRQVQVAPVVR 699
             ||..|.:.|.            ..||    :.:.|...|.||
Zfish   846 FSDAMRSKARLSVTGSTGENGRVMSPE----FPKAVHAVPFVR 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 35/180 (19%)
ANF_receptor 55..377 CDD:279440 32/162 (20%)
PBP2_iGluR_AMPA 410..790 CDD:270433 68/435 (16%)
Lig_chan 542..820 CDD:278489 50/325 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591640
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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