DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grin2b

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_032197.3 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:487 Identity:82/487 - (16%)
Similarity:168/487 - (34%) Gaps:125/487 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 VQSV----GQCHDGKLYPNNAVVKASMQDYVSGFSPRNCTFFACSSISAPFVEADCILGLEMRIL 295
            |:||    |.|....:.....::..:..|...|:..:.|..|             ||     .||
Mouse   419 VESVDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGF-------------CI-----DIL 465

  Fly   296 GFMKNRLKFDVNQTCSLESRGEMDGPAN--WTGLLGKVQNNECDFVFGGYYPDNEVADHFWGSDT 358
            ..:...:||..:  ..|.:.|:.....|  |.|::|:|.........|....:.|.::....|..
Mouse   466 KKISKSVKFTYD--LYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVP 528

  Fly   359 YLQDAHTWYIKMADRRPAWQALVGIFEAYTWI-GFILILIISWLFWFTLVMILP----------- 411
            :::...:..:..::...:..|.:..|.|..|: .|:::||:|.:..|......|           
Mouse   529 FIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGR 593

  Fly   412 ---EPKYYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKMIATFQDP 473
               .|.:....::..:..|....|:.|| .|...|:::.......:.:..:|:||:.:.|.....
Mouse   594 EPGGPSFTIGKAIWLLWGLVFNNSVPVQ-NPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQE 657

  Fly   474 GYLHQLDELTEVVAAGIPFGGHEESRDWFENDDDMWIFNGYNISPEF----IPQSKNLEAV---- 530
            .|:.|:..|::               ..|:..:|        .||.|    :|.......:    
Mouse   658 EYVDQVSGLSD---------------KKFQRPND--------FSPPFRFGTVPNGSTERNIRNNY 699

  Fly   531 --------KWGQR----CILSNRMYTMQSPLAD---------------VIYAFPNNVFSSPVQMI 568
                    |:.||    .:||.:...:.:.:.|               ::......||:|     
Mouse   700 AEMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFAS----- 759

  Fly   569 MKAGFPFLFEMNS---------IIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVLT 624
              .|:....:.:|         |::|..| |..::::|.:.....:..:...|..|       |.
Mouse   760 --TGYGIAIQKDSGWKRQVDLAILQLFGD-GEMEELEALWLTGICHNEKNEVMSSQ-------LD 814

  Fly   625 TEHLKGPFFILVVGSCWAALTFIGELIIHRWR 656
            .:::.|.|::|......:.:|||.|.:.: |:
Mouse   815 IDNMAGVFYMLGAAMALSLITFICEHLFY-WQ 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grin2bNP_032197.3 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 71/435 (16%)
NMDAR2_C 840..1482 CDD:463148 1/7 (14%)
Blue background indicates that the domain is not in the aligned region.

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