DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grik1

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:954 Identity:170/954 - (17%)
Similarity:292/954 - (30%) Gaps:369/954 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWCNNPGLIIIIFL--------GQILNLCQGIVNLSNETANT--VIF------------MLPEKD 43
            :|..:....::.||        .|:|.:......:.||..|.  :.|            ::|...
Mouse    12 LWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTT 76

  Fly    44 LGPDVWKAGVGCLDSFAQIFFFRNPKERFTRAYNLMLVHAFHLSSPADQIQEGFSKLINEAVTNP 108
            |..|:.:  :...|||          |...||.:.:.:....|..|:........:.|..|:..|
Mouse    77 LTYDIQR--INLFDSF----------EASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVP 129

  Fly   109 --------GPPDREELFQMRVASDY-NITNGTEDKGELILADNY----VIVVDSVD--RLKELMK 158
                    ...|..:||.:.:..|| .|:....|   |:|..|:    |:..||..  ||:||:|
Mouse   130 HIQTRWKHPSVDNRDLFYINLYPDYAAISRAVLD---LVLYYNWKTVTVVYEDSTGLIRLQELIK 191

  Fly   159 K--------KIVEMRSWN-----------PGARFLVLFHNATCRNRPLGVASNIFKDLMEM---- 200
            .        ||.::.|.|           .|..|.|:|   .|.:.   .|:.|.|.::.|    
Mouse   192 APSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIF---DCSHE---TAAEILKQILFMGMMT 250

  Fly   201 FYVHRVALLYANSTMN-YNLLVNDY-YSNVNC---RILNV-----------------QSVGQCHD 243
            .|.|     |..:|:: :.|.:..| ||.||.   |:||:                 |:..:...
Mouse   251 EYYH-----YFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPET 310

  Fly   244 GKLYPNNAVVKASMQD--YVSGFSPRNCTFFACSSISA----PFVEADCILGLEMRILGFMKNRL 302
            |.|........|.|.|  |:...:....:....||:..    |:       .|..|.:..:|.  
Mouse   311 GLLDGVMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPW-------RLGPRFMNLIKE-- 366

  Fly   303 KFDVNQTCSLESRGEMDGPANWTGLLGKVQNNECDFVFGGYYPD-------------NEVADH-- 352
                               |.|.||.|::..|:.|.:...:..|             .||:.|  
Mouse   367 -------------------ARWDGLTGRITFNKTDGLRKDFDLDIISLKEEGTEKASGEVSKHLY 412

  Fly   353 -------FWGSD----------------------------TYLQDAHTWYIKMADRRPAWQALVG 382
                   .|.|:                            |.|::.:..|      |.:.:.|.|
Mouse   413 KVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMY------RKSDKPLYG 471

  Fly   383 --IFEAYTWIGFILILIISWLFWFTL-VMILPEPKYYQQLSLTAINALAVTISIAVQERPICETT 444
              .||.|.   ..|:..:|.:..|.. |.::|:.||..|......|.:...:        |....
Mouse   472 NDRFEGYC---LDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKEL--------IDHRA 525

  Fly   445 RLFFMALTLYGLNVVATYTSKMIATFQ------------------DPGYLHQLDELTE------- 484
            .|....||:       ||..:.:..|.                  :||....|:.|:.       
Mouse   526 DLAVAPLTI-------TYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVL 583

  Fly   485 -----------VVAAGIPFGGHEESRDWFE----NDDDMWIFNGYNI--------------SPEF 520
                       |:|...|:       :|:.    |.|...:.|.:.:              ..|.
Mouse   584 LACLGVSCVLFVIARFTPY-------EWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSEL 641

  Fly   521 IPQSKNLEAVK--WGQRCILSNRMYT-----------MQSPL--AD------------------- 551
            :|::.:...|.  |....::....||           |:||:  ||                   
Mouse   642 MPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTM 706

  Fly   552 ------------VIYAFPNNVFSSP--------VQMIMKAGFPFLFEMNSIIRL----------- 585
                        .::||.::...|.        :|.::...:..|.|..||..:           
Mouse   707 TFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 771

  Fly   586 ----MRDVGIFQKIDADFRYNNTYL-------NRINKMRPQF------PE----TAIVLTTEHLK 629
                .:..|:...|.:.:|...|..       .:::.|:.::      ||    .|..|..|::.
Mouse   772 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIG 836

  Fly   630 GPFFILVVGSCWAALTFIGELIIHRWRTQLVSTSEQQDRRSDKR 673
            |.|.:|..|...:....|||.|   ::::..:..||:.:.|..|
Mouse   837 GIFIVLAAGLVLSVFVAIGEFI---YKSRKNNDIEQKGKSSRLR 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 88/446 (20%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 60/399 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846557
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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