DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grid1

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:763 Identity:146/763 - (19%)
Similarity:248/763 - (32%) Gaps:215/763 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LGPDVWKAGVGCLDSFAQIF--FFRNPKERFTRAYNLMLVHAFHLSSPADQIQEGFSKLINEAV- 105
            ||.||....|.  .:.:.:|  .|...|......|...|..|..|.||     :|....||||| 
Mouse   188 LGLDVSLQKVD--KNISHVFTSLFTTMKTEELNRYRDTLRRAILLLSP-----QGAHSFINEAVE 245

  Fly   106 TNPGPPDREELFQMRVASDYNITN-----------------GTED-------------------K 134
            ||....|...:|.....||..|.:                 ..:|                   :
Mouse   246 TNLASKDSHWVFVNEEISDPEILDLVHSALGRMTVVRQIFPSAKDNQKCMRNNHRISSLLCDPQE 310

  Fly   135 GEL-ILADNYVIVVDSVDRLKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLM 198
            |.| :|..:.:.:.|||..|.....:|: |.|.|:..|....:..:....|....:...|.|.  
Mouse   311 GYLQMLQISNLYLYDSVLMLANAFHRKL-EDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKG-- 372

  Fly   199 EMFYVHRVALL--------YANSTMNYNLLVNDYYSNVNCRILNVQSVGQCHDGKLYPNNAVVKA 255
                 |...|.        .:|..:.:.:|...|.......:..:.:         :.:...:..
Mouse   373 -----HITGLTGVMEFREDSSNPYVQFEILGTTYSETFGKDMRKLAT---------WDSEKGLNG 423

  Fly   256 SMQDYVSGFSPRNCTFFACSSISAPFV-EADCILGLEMRILGFMKNRL---------KFDVNQTC 310
            |:|:...|...:..|....:.:..||| .|:.|||...|..||..:.|         |:::.|  
Mouse   424 SLQERPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSIDVLDALAKALGFKYEIYQ-- 486

  Fly   311 SLESR-GEMDGPANWTGLLGKVQNNECDFVFGG--YYPDNEVADHFWGSDTYLQDAHTWYIKMAD 372
            :.:.| |......:|.|::|::.:...|.....  ..|:.|....|  |..|:..:....||..:
Mouse   487 APDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDF--SKRYMDYSVGILIKKPE 549

  Fly   373 RRPAWQALVGIFEAYTWIGFILILIISWLFWFTLVMI---------LPEPK-------------- 414
            .:.:..:|...|:...|......:.:..:..|.|..|         .|.|.              
Mouse   550 EKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQAVRSQSATQPRPSASATLHSAIWIVYG 614

  Fly   415 -YYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKM------------ 466
             :.||...:::|::|:               |:...:..|:.|.|.::||:.:            
Mouse   615 AFVQQGGESSVNSVAM---------------RIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNP 664

  Fly   467 IATFQDPGYLHQLDELTEVVAAGIPFGGHEESR--DWF--------ENDD---DMWIFNGYN--- 515
            |.||||      |.:..|     :.:|...:|.  ::|        |.|.   ::|.....|   
Mouse   665 IRTFQD------LSKQLE-----MSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGA 718

  Fly   516 ----ISPEFIPQSKNLEAVKWGQRCILSNRMYTMQSPLAD---VIYAFPNNVFSSPVQMIMKAGF 573
                .:|     |:.:...|.|....|.:......:.|.|   .:....|::.|....:.::.|.
Mouse   719 DNCVSNP-----SEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGS 778

  Fly   574 PFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVLTTEH---------LK 629
            |:....:..|..::|.|     |.|          :.|.: .:|.|.....|.|         ||
Mouse   779 PYRDLFSQRILELQDTG-----DLD----------VLKQK-WWPHTGRCDLTSHSSTQTEGKSLK 827

  Fly   630 -----GPFFILVVGSCWAALTFIGELIIHRWRTQLVSTSEQQDRRSDK 672
                 |.|.||.:|...|.|....||   .|.:   :...|:..:.||
Mouse   828 LHSFAGVFCILAIGLLLACLVAALEL---WWNS---NRCHQETPKEDK 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 51/271 (19%)
PBP1_iGluR_delta_1 25..425 CDD:380615 48/260 (18%)
PBP2_iGluR_delta_1 436..806 CDD:270448 76/420 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.

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