DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grid2

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_031759030.1 Gene:grid2 / 100487676 XenbaseID:XB-GENE-955038 Length:1007 Species:Xenopus tropicalis


Alignment Length:511 Identity:100/511 - (19%)
Similarity:181/511 - (35%) Gaps:137/511 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 NNAVVKASMQDYVSGFSPRNCTFFACSSISAPFV-EADCILGLEMRILGFMKNRL---------K 303
            |.::....:::.:.|...|..|.     :..||| .::.:||...:..||..:.|         |
 Frog   426 NGSLTDRKLENNMRGVVLRVATV-----LEEPFVMVSENVLGKPKKYQGFSIDVLDALSSYLGFK 485

  Fly   304 FDVNQTCSLESRGEMDGPANWTGLLGKVQNNECDFVFGG--YYPDNEVADHFWGSDTYLQDAHTW 366
            ::: ...|....|......:|.||:|::.....|.....  ..||.|....|  :..|:..:...
 Frog   486 YEI-YVASDHKYGSPQADGSWNGLIGELLLKRADMGISALTITPDRENVVDF--TTRYMDYSVGV 547

  Fly   367 YIKMADRRPAWQALVGIFEAYTW---------IGFILILIISWLFWFTLVMILPEPKYYQQLSLT 422
            .::.|::.....|.:..|:...|         :| :|:.:::||          .|...|..|:|
 Frog   548 LLRKAEKTVDMFACLAPFDLSLWACIAGTVLLVG-LLVYLLNWL----------NPPRLQMGSMT 601

  Fly   423 A---INALAVTISIAVQ---ERPICE-TTRLFFMALTLYGLNVVATYTSKMIATF---QDPGYLH 477
            :   .|::.......||   |.|... .||:...|..|:.|.|:::||:.:.|..   :....:.
 Frog   602 STTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTISRIESSIQ 666

  Fly   478 QLDELTEVVAAGIPFGGHEESRDW----------FEND---DDMW-IFNGYNISPEFIPQS-KNL 527
            .|.:|:.  ...||:|...:|..:          ||.|   ..|| :.|..|.|...:.:| :.:
 Frog   667 SLQDLSR--QTDIPYGTVFDSAVYEHVRVKGMNPFERDSMYSQMWRMINRSNGSENNVQESLEGI 729

  Fly   528 EAVKWG------------------QRCILSNRMYTMQSPLADVIYAFPNNVFSSPVQMIMKAGFP 574
            :.||.|                  |.|    ..||:.:.:||..|.           :.::.|.|
 Frog   730 QKVKHGNYAFVWDAAVLEYIAINDQDC----SFYTVGNTIADRGYG-----------IALQHGSP 779

  Fly   575 FLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAI-----------VLTTEHL 628
            :           ||  ||.:...:.:.|.......:|..|:..:..:           .|..:..
 Frog   780 Y-----------RD--IFSQRILELQQNGDMDILKHKWWPRNGQCELHSSMDTKQKGSSLDIKSF 831

  Fly   629 KGPFFILVVG---SCWAALTFIGELIIHRWRTQLVST---SEQQDRRSDKRRRRRR 678
            .|.|.||..|   ||:.|:       :..|..:...:   |::.|:..|.....||
 Frog   832 SGVFCILAAGIVLSCFIAM-------VETWWNKKKGSRVPSKEDDKEIDLEHLHRR 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grid2XP_031759030.1 Periplasmic_Binding_Protein_type1 28..429 CDD:415822 1/2 (50%)
PBP2_iGluR_delta_2 440..806 CDD:270449 83/414 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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