DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grin2cb

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:782 Identity:127/782 - (16%)
Similarity:271/782 - (34%) Gaps:217/782 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NETANTVIFMLPEKDLGPDV--------WKAGVGCLDSFAQIFFFRNPKERFTRAYNLMLVHAFH 85
            ::..|.:..::.|.:.|..|        ::..|..:.||....:|         .:.|..|.:|.
Zfish   155 DQQINAMFKVMEEYNWGNFVVITSLYPGYETFVDYIRSFTDTSYF---------LWELQDVLSFE 210

  Fly    86 LSSPADQIQ-EGFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYVIVVDS 149
            :|..|:.|: ....:.::..|........|..:..|:|||..           :|...|:.:|.|
Zfish   211 MSVGANDIRTRRLLQQVDSQVYLVYCSHEEAQYLFRMASDVG-----------LLGPGYIWIVPS 264

  Fly   150 V----------------------DRLKELMKKKIVEMRSWNPGARFLV----LFH---------N 179
            :                      ||.::.:::::.|      |...:|    .||         :
Zfish   265 LAVGNPEAAPPASFPVGVISIITDRWRKTLRQRVRE------GVAIIVKGVHSFHKHRGFIPEGH 323

  Fly   180 ATCRNRPLGVASN-IFKDLMEMFYVHRVALLYANSTMNYNLLVNDYYSNVNCRILNV------QS 237
            :.|.:.....|:| :|:.::.:.:.|:        .:::|  .:.|.:|.:..|:.:      ..
Zfish   324 SDCSSPVKSYANNSLFRHMLNVSWEHK--------DLSFN--SDGYLTNPSMVIIALDRENHWDK 378

  Fly   238 VGQCHDGKL---YP--------------NNAVVKASMQ----------DYVSGFSPRNCTFFAC- 274
            ||....|.|   ||              |..:..|:::          |..:|...||..  .| 
Zfish   379 VGSYEGGILQMRYPVWPRYGSFLEPVSDNRHLTVATLEERPFVIVESVDPATGTCVRNTV--PCR 441

  Fly   275 ------SSI---SAPFVEADCILGLEMRILGFMKNRLKFDVNQTCSLESRGEMDGPAN--WTGLL 328
                  .||   :.|:.:. |..|..:.||..:...:||..:  ..|.:.|:......  |.|::
Zfish   442 RQSNRTESIIGHTEPYTKL-CCKGFCIDILKKLSRTIKFSYD--LYLVTNGKHGKMVRGVWNGMI 503

  Fly   329 GKVQNNECDFVFGGYYPDNEVADHFWGSDTYLQDAHTWYIKMADRRPAWQALVGIFEAYTWI-GF 392
            |:|.....|...|....:.|.::....|..:::...:..:..::...:..|.:..:....|: .|
Zfish   504 GEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMF 568

  Fly   393 ILILIISWLFWFTLVMILPEPKYYQQLSLTAINALAVTISIAVQ-------------ERPICETT 444
            ::.|.:..:..|......|.......:|..|......||..:|.             |.|...|:
Zfish   569 VMCLTVVAVTVFVFEYFSPVGYNRSLVSAKAPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTS 633

  Fly   445 RLFFMALTLYGLNVVATYTSKMIATFQDPGYLHQLDELTE------------VVAAGIPFGGHEE 497
            ::..:....:.:..:|:||:.:.|......|:..:..|::            .....:|.|..| 
Zfish   634 KIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTE- 697

  Fly   498 SRDWFENDDDMWIFNGYNISPEFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFPNNVFS 562
             |:...|..||                 :...:|:.|:.: ...:.::::...|   ||   ::.
Zfish   698 -RNIRSNYPDM-----------------HTHMIKYNQKGV-EEALNSLKTGKLD---AF---IYD 737

  Fly   563 SPV-------------------QMIMKAGFPFLFEMNSIIRLMRDVGIFQKI-DADF-RYNNTYL 606
            :.|                   ::....|:....:.:|..:...|:.:.|.: |.|. |....:|
Zfish   738 AAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDLALLQFLGDGDTQRLETVWL 802

  Fly   607 -----NRINKMRPQFPETAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQ-LVSTSEQ 665
                 |..|::      .:..|..:::.|.|::|:|....:.|.|..|.::: |:.: .|..|::
Zfish   803 SGICQNEKNEV------MSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLLY-WKLRHSVHKSDR 860

  Fly   666 QD 667
            .|
Zfish   861 LD 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 46/276 (17%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 67/431 (16%)
NMDAR2_C 845..>932 CDD:313729 4/19 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591633
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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