DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3356 and Herc4

DIOPT Version :10

Sequence 1:NP_611896.1 Gene:CG3356 / 37876 FlyBaseID:FBgn0034989 Length:1122 Species:Drosophila melanogaster
Sequence 2:NP_084390.1 Gene:Herc4 / 67345 MGIID:1914595 Length:1057 Species:Mus musculus


Alignment Length:668 Identity:176/668 - (26%)
Similarity:285/668 - (42%) Gaps:113/668 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   507 FKLAAESTQLGFSAPLTLISKGVVPKHQGVDRTIPLLATFCMLFGRLLP----TLHDVEFVENKL 567
            ::.....:.:..:|...|..|.:.|.|..:.:.:.     ..|...|:|    :|.|||      
Mouse   449 YRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVA-----ASLEKNLIPKLTSSLPDVE------ 502

  Fly   568 LLQVHSTINHVRLM-----------PFSIAEIIQMSKT-LK-----------DISMGLVELAFPE 609
            .|:.:.|:....||           ||..| ::.:.|. ||           .:.:.:||| |.|
Mouse   503 ALRFYLTLPECPLMSDCNNFTTIAIPFGTA-LVNLEKAPLKVLENWWSVLEPPLFLKIVEL-FKE 565

  Fly   610 TRSNLANYRKVLGHTEADDKKLRHQKQIWANLLNVVVFVLNQIHTRDLRLG-FCPEDHWTVTRLD 673
            ...:|....|: |...:       :::|:.:.|:..:.||..:|..:.:.| ....|.:.:..:.
Mouse   566 VVVHLLKLYKI-GIPPS-------ERRIFNSFLHTALKVLEILHRVNEKTGQLIQYDKFYIHEVQ 622

  Fly   674 LPLDRPTDLPLTHSSRLRGIRPFQPIRDFTREDFENGPPMSTKQIRSITILREIPFVV---PF-- 733
            ..:|...|.......:..|:            |..:|          :|.|.:||..:   ||  
Mouse   623 ELIDIRNDYINWVQQQAYGV------------DVSHG----------VTELADIPVTICTYPFVF 665

  Fly   734 --------NKRVSILQSLVAASKMRVQGNMQAFLQ-----GPSVLITVRRSHLYEDAYDKLRPDN 785
                    .:..::||..:|..:...|.....||.     .|.:::.|||.::..||.:.||...
Mouse   666 DAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTK 730

  Fly   786 EPDLRFKFRIQFVSSLGLDEAGIDGGGVFREFLSELIKTAFDPNRGFFMVTTDNKL--YPNPNVA 848
            ..|.:...::.||.     |..:|.|||.:||...:::...||..|.|....|::|  :.:..  
Mouse   731 NIDYKKPLKVIFVG-----EDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKT-- 788

  Fly   849 DLFEDYEKHYYFIGRILGKSIYENLLVEL--PLAEFFLTKLAGKYSDVDIHQLASLDPELYRNLL 911
              |||.:. ::.||.|.|.:||...:|:|  |||.:  .||..:...:|  .|..|.|.:.|::.
Mouse   789 --FEDSDL-FHLIGVICGLAIYNFTIVDLHFPLALY--KKLLKRKPSLD--DLKELMPAVGRSMQ 846

  Fly   912 YLKDY-SGDVSE-LNLDFTVASSSLGQTQIVELKPQGQSIPVTNSNRIEYLQLIADYKLNVQIRR 974
            .|.|| ..|:.| ..|:||:...:.|.|::.||...|....|...||.|::....||..|..:..
Mouse   847 QLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVAS 911

  Fly   975 HCNAFRKGLSNVLPIEWLYMFSNKELQILISGAEIPIDLEDLKKHCEYGGEFSPEHPSIVTFWEV 1039
            ..:||..|...|...:.|.:|...|||.::.| ....|.::|:|:.||.||:..:||:|..||||
Mouse   912 LFDAFHAGFHKVCGGKVLLLFQPNELQAMVIG-NTNYDWKELEKNTEYKGEYWADHPTIKIFWEV 975

  Fly  1040 LEGFDDMQRRQLLKFVTSCSRPPLLGFKDLDPPFFIQNTGDMER-LPTASTCTNLLKLPPFKTVE 1103
            .......:::|.|.|:|...|.|:||.|.|  ...||:||..|. ||.:.||.|||.||.:...|
Mouse   976 FHELPLEKKKQFLLFLTGSDRIPILGMKSL--KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKE 1038

  Fly  1104 QMREKLLYAIQSGAGFEL 1121
            .:|.||:.||....||.|
Mouse  1039 TLRCKLIQAIDHNEGFSL 1056

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3356NP_611896.1 HECTc 766..1120 CDD:238033 119/360 (33%)
Herc4NP_084390.1 RCC1 1 1..51
ATS1 3..338 CDD:444065
RCC1 2 52..101
RCC1 3 102..154
RCC1 4 156..207
RCC1 5 208..259
RCC1 6 261..311
RCC1 7 313..366
HECTc 709..1055 CDD:238033 119/362 (33%)
Blue background indicates that the domain is not in the aligned region.

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