DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3356 and herc4

DIOPT Version :10

Sequence 1:NP_611896.1 Gene:CG3356 / 37876 FlyBaseID:FBgn0034989 Length:1122 Species:Drosophila melanogaster
Sequence 2:XP_031760534.1 Gene:herc4 / 100036667 XenbaseID:XB-GENE-962981 Length:1057 Species:Xenopus tropicalis


Alignment Length:637 Identity:166/637 - (26%)
Similarity:270/637 - (42%) Gaps:106/637 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   525 ISKGVVPKHQGVDRTIPLLATFCMLFGRLLPTLHDVEFVEN--KLLLQVHSTINHVRLMPFSIAE 587
            :.|.::|:.......|.     |:....:||....:....|  .|.:...:.|.::...|..:.|
 Frog   486 LEKNLIPRLTSSPPDIE-----CLRLYLILPECPPMADANNLTSLAIPFGTAIVNLEKAPLKVLE 545

  Fly   588 ----------IIQMSKTLKDISMGLVELA---FPETRSNLANYRKVLGHTEADDKKLRHQKQIWA 639
                      .:::.:..||:.:.|::|:   .|.|                       :::::.
 Frog   546 NWWSLLEPPLFLKVVQLYKDVVVHLLKLSKNGIPLT-----------------------ERRLFY 587

  Fly   640 NLLNVVVFVLNQIH-TRDLRLGFCPEDHWTVTRLDLPLDRPTDLPLTHSSRLRGIRPFQPIRDFT 703
            ..||..:.||..:| ..:......|.|.:.:..:...:|...|.......:..|:          
 Frog   588 RFLNTALRVLEILHRVNEKAAQIIPYDKFYIHEVQDFVDIQNDYINWIKQQASGM---------- 642

  Fly   704 REDFENG------PPMSTKQIRSITILREIPFVVPFNKRVSILQS-LVAASKMRV-----QGNMQ 756
              |..:|      ||        :||. ..|||.....:.::||: .|...:|.|     |.|:.
 Frog   643 --DVNHGLYEVADPP--------VTIC-TYPFVFDAQAKTTLLQTDAVIQMQMAVDNAHRQNNLS 696

  Fly   757 AFLQG-----PSVLITVRRSHLYEDAYDKLRPDNEPDLRFKFRIQFVSSLGLDEAGIDGGGVFRE 816
            .....     |.:::.|||.::..||.:.||.....|.:...|:.|     ..|..||.|||.:|
 Frog   697 WLFPATESVDPCLILVVRRDNIVGDAMEVLRKTKNIDYKKPMRVIF-----FGEEAIDAGGVRKE 756

  Fly   817 FLSELIKTAFDPNRGFFMVTTDNKL--YPNPNVADLFEDYEKHYYFIGRILGKSIYENLLVEL-- 877
            |...:::...||..|.|....:::|  :.:..    |||.:. ::.||.:.|.:||...::||  
 Frog   757 FFLLIMRELLDPKYGMFRYYEESRLIWFSDKT----FEDSDL-FHLIGVVCGLAIYNFTIIELHF 816

  Fly   878 PLAEFFLTKLAGKYSDVDIHQLASLDPELYRNLLYLKDYSGDVSE--LNLDFTVASSSLGQTQIV 940
            |||.:  .||..|...::  .|..|.|.:.|::..|.||:.|..|  ..|:||:...:.|.|::.
 Frog   817 PLALY--KKLLKKKPSLE--DLKELMPIIGRSMQQLLDYTEDDIEETFCLNFTITVENFGTTEVR 877

  Fly   941 ELKPQGQSIPVTNSNRIEYLQLIADYKLNVQIRRHCNAFRKGLSNVLPIEWLYMFSNKELQILIS 1005
            ||.|.|..|||...||.:::....||..|..:....:||..|...|...:.|.:|...|||.::.
 Frog   878 ELIPNGAEIPVNRKNRQDFVDAYVDYIFNQSVASLFSAFSAGFHKVCGSKVLELFQPNELQAMVI 942

  Fly  1006 GAEIPIDLEDLKKHCEYGGEFSPEHPSIVTFWEVLEGFDDMQRRQLLKFVTSCSRPPLLGFKDLD 1070
            | ....|.::|:|..||.||:..:||:|..|||:.......:::|.|.|:|...|.|:||.|.| 
 Frog   943 G-NTAYDWKELEKSTEYKGEYWADHPTIKMFWEIFHALPLEKKKQFLLFLTGSDRIPILGMKSL- 1005

  Fly  1071 PPFFIQNTGDMER-LPTASTCTNLLKLPPFKTVEQMREKLLYAIQSGAGFEL 1121
             ...||.||..|: ||.|.||.|||.||.:...|.:|.||:.||....||.|
 Frog  1006 -KLVIQPTGGGEQFLPVAHTCFNLLDLPKYSKKETLRSKLIQAIDHYEGFSL 1056

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3356NP_611896.1 HECTc 766..1120 CDD:238033 120/360 (33%)
herc4XP_031760534.1 ATS1 3..338 CDD:444065
HECTc 709..1055 CDD:238033 120/362 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.