DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and tbx20

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001030292.1 Gene:tbx20 / 619590 XenbaseID:XB-GENE-487334 Length:440 Species:Xenopus tropicalis


Alignment Length:323 Identity:70/323 - (21%)
Similarity:117/323 - (36%) Gaps:85/323 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1862 TSSSSSHLPASKSAYPKINESLQELFSSGVPPGGITITKVDSQEKTL-PNETVQVVKNKK----- 1920
            |.|....|.:..:|:     |:..|.|||.|      ...::||.|: |.|  |.|:...     
 Frog     4 TPSPKPQLSSRANAF-----SIAALMSSGTP------KDKETQESTIKPLE--QFVEKSSCSQPL 55

  Fly  1921 -SIAITGIHKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQPKTLVRLYPK---- 1980
             .|:|...|.:.|.:.||..|........|.| |..::|::      .:.:.|   .|:.|    
 Frog    56 GDISIVDSHGEFTNSPSSLCTEPLIPTTPVIP-SEEMAKIS------CSLETK---ELWDKFHDL 110

  Fly  1981 ----PALAAGRKSLPANAKTPVATPRQS-QPVACDKPPLVSGSTLPALVEPSARKSLPSKPLAAG 2040
                ....:||:..|        |.|.| ..|..|...:|....:|          :.:|.....
 Frog   111 GTEMIITKSGRRMFP--------TIRVSFSGVDADAKYIVLMDIVP----------VDNKRYRYA 157

  Fly  2041 EHLRPRQSLPAKVTANPPAAAR----PDAASTSAQ---NLTNVSKAQLAKEEI-CYGIMVAKDLP 2097
            .|   |.|......|:||..||    ||:..|..|   .:.:..|.:|...|: .:|.::...:.
 Frog   158 YH---RSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMVSFEKVKLTNNELDQHGHIILNSMH 219

  Fly  2098 RFRAKVEGSDFMIKIPEHGVFRFKTFGLAASFLSRHVAKDPKLKQFLPAEWKFHPLEQFNKQV 2160
            :::.:|.    :||..:|          .||.|:   .|..:.:.|:..|..|..:..:..|:
 Frog   220 KYQPRVH----IIKKKDH----------TASLLN---LKSEEFRTFIFQETVFTAVTAYQNQL 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
tbx20NP_001030292.1 T-box 96..282 CDD:366363 42/211 (20%)
T-box 98..282 42/209 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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