DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and tbx-43

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001040883.1 Gene:tbx-43 / 4363053 WormBaseID:WBGene00044798 Length:305 Species:Caenorhabditis elegans


Alignment Length:292 Identity:51/292 - (17%)
Similarity:84/292 - (28%) Gaps:108/292 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1373 LMARMLMNSMRNEKTNRLAVVMQGRQSF----WLVKGFLRHMQGNACTKPTPMTHPLLTKKINVL 1433
            ||.:.|.... :.:.|.:.:...||..|    :..||...|                |..||.|.
 Worm     7 LMEKSLWREF-DSQCNEMIITKIGRNLFPILEFAFKGLCEH----------------LNYKIGVT 54

  Fly  1434 CSLLVKQRVRENEKKTLGDGSGAPYEVLAGDVSPQTSLLMKNRSRDLKRKSQADE-RLLPSGPSM 1497
            ...:..|:::      ...|.....::....|.|....|||:....|:|..:.:: :|..|..::
 Worm    55 MEPISYQKLK------FTAGRWESLDIQEEMVQPNEVFLMKSGRELLQRGLKLEKLKLTNSKDAL 113

  Fly  1498 TKSSK-----------PSAGGY---PIAA------------------------------------ 1512
            .||.:           |....|   |:.|                                    
 Worm   114 QKSDQMIRVQSMRQYMPVLNIYEISPVGAHNQIGKFQFPETKFIAVTAYQSELVKQLKVQKNKFA 178

  Fly  1513 --------SVATSTT----SAFASSSGKSTPVCTAKTNSASTKNKSSATGIRSNIEFRKVNHNDV 1565
                    |.|||:|    |..:|:|...:.:..:..|...|..|....|....:.....|:...
 Worm   179 QGFRESIKSNATSSTKRPLSTTSSNSSPDSTLSMSSENLGHTTKKGRGGGQEIGVLLTSQNYQSF 243

  Fly  1566 DELQIPELHQTDHRWVVLDIFDDFSHIFVPSF 1597
            |:                  |.:||..|.|:|
 Worm   244 DQ------------------FSNFSQAFPPNF 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
tbx-43NP_001040883.1 T-box 5..183 CDD:279278 31/198 (16%)
Ashwin <170..>221 CDD:291969 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159249
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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