DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Doc1

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster


Alignment Length:393 Identity:81/393 - (20%)
Similarity:138/393 - (35%) Gaps:124/393 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1727 LKIPSQLSVEIEKNQ------DEVPPVVVIDSDEEDDDGERQLVIDEQ------DDEQAETDVKQ 1779
            :::..||:.||.:.|      |..|.::..:...:    :..:::..:      :.:....|:.|
  Fly    10 MRMQQQLAHEIYRQQIMQRIPDPFPSMLPFNMPHQ----QPHMMLPSRPTLPGVEAKLENNDLWQ 70

  Fly  1780 EVERTGFTIQTLPSSG-----ALQITISDSAETSSH-------PAKDVNTCH--FSGGFMPFIAN 1830
            :..:.| |...:..||     ::::::|...|.:|:       |..|   |.  |||...     
  Fly    71 QFHKIG-TEMIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGD---CRYKFSGSQW----- 126

  Fly  1831 VPAKFGE-TAPTTQFLTPQVQVTTSQSGPETL----------TSSSSSHLP-ASKSAY-PKI--- 1879
            |||...| .:|...:|.|....|.:....:.|          |..||.|:. ||...| |::   
  Fly   127 VPAGGAEPQSPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHII 191

  Fly  1880 -NESLQELFSSGVPPGGITITKVDSQEKT-LPNETVQVVKNKKSIAITGIH--------KQVTKA 1934
             :..|.:|  ...|.......:.:....| ..|:.:..:|...:....|..        :::..:
  Fly   192 RSSELTQL--PWAPQQAFVFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKLNSS 254

  Fly  1935 ASST-------ATVTAARAPVVKPQ-------ST-SVS--------KVAPPIRP----------- 1965
            .:||       ::|::..:|..|.|       || |||        .||.|:.|           
  Fly   255 GNSTLESEDDGSSVSSCDSPQAKRQRQDFEQDSTGSVSPAYYGATHPVANPMSPYLRHHLSYGPS 319

  Fly  1966 GATTQPKTLVRLY---------PKPALAAGRKSLPANAKTPVA--TPRQSQPVACDKP---PLVS 2016
            ||...|.::...|         |.|         ||.....||  :|..||||....|   |..|
  Fly   320 GAAGLPPSIAAAYFGGVPPQILPMP---------PATYAPTVAPVSPVASQPVGSSTPTTSPRPS 375

  Fly  2017 GST 2019
            .||
  Fly   376 TST 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Doc1NP_648283.1 TBOX 58..245 CDD:238106 39/197 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439062
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11267
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.930

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