DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Doc3

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster


Alignment Length:479 Identity:93/479 - (19%)
Similarity:151/479 - (31%) Gaps:163/479 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1457 PYEVLAGDVSPQTSLLMKNRSRDLKRKSQADERLLPS-GPSMTKSSKPSAGG------YPIAASV 1514
            |...|.|||..:    ::|.....:..|...|.::.. |..|..|.:.|..|      |.:...:
  Fly    51 PQPTLPGDVEAK----LENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEM 111

  Fly  1515 ATSTTSAFASSSGKSTPVCTAKTNS-----------ASTKNKSSATGIRSNIEFRKVNHNDVD-- 1566
            .......:..|..:..|...|:..|           |:.|:..|...:.|.:   |:.:|.:|  
  Fly   112 VPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKV---KLTNNTLDNN 173

  Fly  1567 -ELQIPELHQTDHRWVVLDIFDDFSHI-------FVPSFSDMISLTRIHSVMQVAEERQKVVKLQ 1623
             .:.:..:|:...|..|:.. .|...|       |:...::.|::|        |.:..::.||:
  Fly   174 GHIVLASMHKYQPRLHVIRT-SDLGQIPWAPQQAFIFPETEFIAVT--------AYQNDRITKLK 229

  Fly  1624 FFPNAPYDAFVTPSS----KKKIYFGPLSLDMPPPVLVLLQSVDRKMM-------LREV------ 1671
             ..|.|:......|.    |:||.      |.|||.......|||..:       ||.|      
  Fly   230 -IDNNPFAKGFRESGQSRCKRKIN------DSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFPQH 287

  Fly  1672 --YQREHSIPVQRHRRSMAFWVLQINGQVHFEIDTESTAKLAAQQKNAIGTPPGLNVLKIPSQLS 1734
              :|..||:|:||                |:.:|       |.:....:..||            
  Fly   288 HHHQSHHSVPMQR----------------HYLLD-------ALEANFYVPAPP------------ 317

  Fly  1735 VEIEKNQDEVPPVVVIDSDEEDDDGERQLVIDEQDDEQAETDVKQEVERTGFTIQTLPSSGALQI 1799
                      ||.:                      |.|. .:........:|    |.|.|..:
  Fly   318 ----------PPAI----------------------EYAR-HIGGAYPSWAYT----PPSPASSV 345

  Fly  1800 TISDSAETSSHPAKDVNTCHFSGGFMPFIANVPAKFGETAPTTQFLTPQVQVTTSQSGPETLTSS 1864
            :.|.:..||...|.|......:..|:..:...||     ||...  :|.|        |.|.|: 
  Fly   346 SSSSAGSTSGESAADREADADADTFVDVVGTAPA-----APPPP--SPPV--------PATATA- 394

  Fly  1865 SSSHLPASKSAYPKINESLQELFS 1888
                 |||.|:.|.:.:..:..||
  Fly   395 -----PASSSSDPTMAKPKRSSFS 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241
Doc3NP_648280.1 T-box_Drosocross-like 59..241 CDD:410332 34/198 (17%)
Blue background indicates that the domain is not in the aligned region.

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