DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ocm and Tbx6

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:XP_038941217.1 Gene:Tbx6 / 365371 RGDID:1307716 Length:463 Species:Rattus norvegicus


Alignment Length:396 Identity:80/396 - (20%)
Similarity:121/396 - (30%) Gaps:142/396 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1784 TGFTIQTLPSSGALQITISDS----AETSSHPAKDVNT----CHFSGGFMPFIANVPAKFGETAP 1840
            ||:.:.. |..||      ||    |.|..:...|::|    |..||             .|.||
  Rat    13 TGYRLGH-PQPGA------DSTFPPALTEGYRYPDLDTSKLDCFLSG-------------IEAAP 57

  Fly  1841 TTQFLTPQVQVTTSQSGPETLTSSSSSHLPASKSAYPKINESL--QELFS--SGV---------- 1891
            .|....|.:.:..|..||||....     |.:..:.|.::.||  |||:.  |.|          
  Rat    58 HTLAAPPPLPLLPSALGPETAPPP-----PEALHSLPGVSLSLENQELWKEFSAVGTEMIITKAG 117

  Fly  1892 ----PPGGITITKVDSQ------------------------------EKTLPNE----------- 1911
                |...:::|.:|.:                              |..||:.           
  Rat   118 RRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGQHWEPSGKAEPRLPDRVYIHPDSPATG 182

  Fly  1912 --------TVQVVKNKKS-------IAITGIHKQVTKAASSTATVTAAR-----APVVKPQSTSV 1956
                    :...||...|       :.:..:||...:.....||...::     |....|::|.:
  Rat   183 AHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQLCSQHWGGVASFRFPETTFI 247

  Fly  1957 SKVA---PPIRPGATTQPKTLVRLYPKPALAAGR---KSLPANAKTPVATPRQSQPVACDKPPLV 2015
            |..|   |.|     ||.|.....:.|.....||   :...|..|..:..|......||..    
  Rat   248 SVTAYQNPRI-----TQLKIAANPFAKGFRENGRNCKRERDARVKRKLRGPEPVATEACGS---- 303

  Fly  2016 SGSTLPALVEPSARK-SLPSKPLAA--------------GEHLRPRQSLPAKVTANPPAAARPDA 2065
            .|...|..:.|:.|| :.||:|:.:              |..:|.....||.......:|:.|..
  Rat   304 GGECCPGGMGPNLRKGASPSQPVLSVSSDTPGGPCDSTLGGDIRDSDPEPAPTPQEAASASAPPC 368

  Fly  2066 ASTSAQ 2071
            ...||:
  Rat   369 GGPSAE 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Tbx6XP_038941217.1 T-box_TBX6 91..273 CDD:410322 31/186 (17%)
PHA03247 <293..453 CDD:223021 19/86 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335201
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.