DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ocm and Tbx1

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:XP_006248681.1 Gene:Tbx1 / 360737 RGDID:1307734 Length:530 Species:Rattus norvegicus


Alignment Length:650 Identity:121/650 - (18%)
Similarity:194/650 - (29%) Gaps:273/650 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly  1492 PSGPSMTKSSKPSAGGYPIAASVATSTTSAFASSSGKSTPVCTAKTNSASTKNKSSATGIRSNIE 1556
            |..|    ...|....||.|.:...:::||..|....::....||   |..|.......:...:|
  Rat    98 PGAP----GPPPPPRAYPFAPAPGAASSSAAESEGPGASRAAAAK---APVKKNPKVASVSVQLE 155

  Fly  1557 FRKVNHNDVDELQIPELHQTDHRWVVLDIFDDFSHIFVPSFSDMISLTRIHSVMQVAEERQKVVK 1621
            .:.                         ::|:|:.:    .::||                    
  Rat   156 MKA-------------------------LWDEFNQL----GTEMI-------------------- 171

  Fly  1622 LQFFPNAPYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVDRK---MMLREVYQREHSIPVQRH 1683
                        ||.:.::          |.|...|.|..:|..   |:|.:.      :||...
  Rat   172 ------------VTKAGRR----------MFPTFQVKLFGMDPMADYMLLMDF------VPVDDK 208

  Fly  1684 RRSMAF----WVL------QINGQVHFEIDTESTAKLAAQQKNAIGTPPGLNVLKIPSQLSVEIE 1738
            |...||    |::      ...|:||:..|  |.||.|...|..:    ..:.||:.:.|   ::
  Rat   209 RYRYAFHSSSWLVAGKADPATPGRVHYHPD--SPAKGAQWMKQIV----SFDKLKLTNNL---LD 264

  Fly  1739 KNQDEVPPVVVIDSDEEDDDGERQLVIDEQDDEQ--AETDVKQEV-ERTGFTIQTLPSSGALQIT 1800
            .|..     ::::|..........:.:|.:.|.:  ||.:.|..| |.|.||..|     |.|..
  Rat   265 DNGH-----IILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVT-----AYQNH 319

  Fly  1801 ISDSAETSSHPAKDVNTCHFSGGFMPFIANVPAKFGETAPTTQFLTPQVQVTTSQSGPETLTSSS 1865
            .....:.:|:|        |:.||                             ....||.     
  Rat   320 RITQLKIASNP--------FAKGF-----------------------------RDCDPED----- 342

  Fly  1866 SSHLPASKSAYPKINESLQELFSSGVPPGGITITKVDSQEK------TLPNETVQVVKNKKSIAI 1924
                      :|:.:.           ||.:.:....::.:      |.||              
  Rat   343 ----------WPRNHR-----------PGALPLVSAFARSRNPVASPTQPN-------------- 372

  Fly  1925 TGIHKQVTKAA------SSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQPKTLVRLYPKPAL 1983
             |..|.|.:|.      |..|.:..|..|   ||  .:::|..|..||    |..||   |.|..
  Rat   373 -GADKDVAEARREFDRDSGPAALGDATHP---PQ--LLARVLSPALPG----PGGLV---PLPGG 424

  Fly  1984 AAGRKSLPANAKTPVATPRQSQPVACDKPPLVSGSTLPALVEPSARKSLPSK-PLAAGEHLRPRQ 2047
            :.||.| |.:|...:..|..|:|:                      ...|.| |.||.:|....:
  Rat   425 SGGRHS-PPHADLRLEAPGASEPL----------------------HHHPYKYPAAAYDHYLGAK 466

  Fly  2048 SLPAKVT----------------ANP---------PAAARPDAASTSAQNLTNVSKAQLAKEEIC 2087
            |.||...                |:|         ||||   ||:.:|.|:.:.:.|.....:.|
  Rat   467 SRPAPYPLPGLRGHGYHPHAHPHAHPHHHHHPAVNPAAA---AAAAAAANVYSSAAAPPGAYDYC 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Tbx1XP_006248681.1 TBOX 150..339 CDD:238106 52/321 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335236
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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