DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx3

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_853669.1 Gene:Tbx3 / 353305 RGDID:735203 Length:743 Species:Rattus norvegicus


Alignment Length:642 Identity:127/642 - (19%)
Similarity:215/642 - (33%) Gaps:188/642 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1546 SSATG---IRSNIEFRKVN-HNDVDE-----LQIPELHQT---DHRWVVLDIFDDFSHIFVPSFS 1598
            |.|||   :...:.|.|:. .|::.:     |..|..|.|   ::.:....|.:.. |.:.|.| 
  Rat   190 SPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAFPSDHATWQGNYSFGTQTILNSM-HKYQPRF- 252

  Fly  1599 DMISLTRIHSVMQVAEERQKVVKLQFFPNAPYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVD 1663
               .:.|.:.::::.   ....:...||...:.| ||.....||  ..|.:|..|.......:.:
  Rat   253 ---HIVRANDILKLP---YSTFRTYLFPETEFIA-VTAYQNDKI--TQLKIDNNPFAKGFRDTGN 308

  Fly  1664 -RKMMLREVYQREHSIPVQRHRRSMAFWVLQINGQVHFEIDTESTAKLAAQQKNAIGTPP----- 1722
             |:...:::..:...:..:||::...             ...||:::.||....|..:.|     
  Rat   309 GRREKRKQLTLQSMRVFDERHKKETG-------------TSDESSSEQAAFNCFAQASSPAVSTV 360

  Fly  1723 GLNVLK--IPSQL--SVEIEKNQDEVP---PVVVIDSDEEDDDG--------ERQLVIDEQDDEQ 1772
            |.:.||  .||:.  ..|.|..::..|   ....|.:...::.|        ..||.       .
  Rat   361 GTSNLKDLCPSEAESDAEAESKEEHGPEACDTAKISTTTAEEPGRDKGSPATRAQLF-------P 418

  Fly  1773 AETDVKQEVERTGFTIQTLPSSGALQITISDSA----------------------ETSSHPAKDV 1815
            ||....::..|..   :..|.|.....|||.|.                      |..:.||||.
  Rat   419 AEPSRARDTARLD---KASPDSRHSPATISSSTRVPGADEHRSPGREGPVSAKVDEARALPAKDA 480

  Fly  1816 ---------NTCHFSGGFMPFIANVPAKFGET----APTTQFLTP---------------QVQVT 1852
                     .|.|.:.|.:|.:...|...|:.    .|.  ||.|               ...:.
  Rat   481 FAPLSVQTDATAHLTQGPLPGLGFAPGLAGQQFFNGHPL--FLHPGQFAMGGAFSSMAAGMGPLL 543

  Fly  1853 TSQSGPETLTSSSSSHLPASKSAYPKINESLQELFSSGVPPGGITITKVDSQEKTLPNETVQVVK 1917
            .:.||..|..|...|...||.:|...:         ||            :...|||....|.|.
  Rat   544 ATVSGASTGVSGLDSTAMASAAAAQGL---------SG------------ASAATLPFHLQQHVL 587

  Fly  1918 NKKSIAITGI-----HKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQP------ 1971
            ..:.:|::..     :.....||::.|:..||.:.|.:....:::.:.|.:|....:.|      
  Rat   588 ASQGLAMSPFGSLFPYPYTYMAAAAAASSAAASSSVHRHPFLNLNSMRPRLRYSPYSIPVPVPDS 652

  Fly  1972 -KTLVRLYPKPALAAGRKSLPANAKTPV--ATPRQSQPVACDKPPLVSGSTLPALVEPSARKSLP 2033
             ..|....|..|.|||    |.:.|:.|  |:|..   ||.|     |||.|      ::|    
  Rat   653 SSLLATALPSMASAAG----PLDGKSAVLAASPAS---VAVD-----SGSEL------NSR---- 695

  Fly  2034 SKPLAAGEHLRPRQSLPAKVTANPPAAARPDAASTSAQNLTN-VSKAQLAKEEICYG 2089
            |..|::|           .|:.:|...:..:||::..|::.. ||..:...:..|.|
  Rat   696 SSTLSSG-----------SVSLSPKLCSEKEAATSELQSIQRLVSGLEAKPDRSCSG 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Tbx3NP_853669.1 T-box_TBX2_3-like 101..305 CDD:410314 26/125 (21%)
TBX 323..404 CDD:403708 17/93 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 371..467 17/105 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335233
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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