DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx18

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001101643.1 Gene:Tbx18 / 315870 RGDID:1309856 Length:612 Species:Rattus norvegicus


Alignment Length:458 Identity:98/458 - (21%)
Similarity:148/458 - (32%) Gaps:128/458 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1740 NQDE-VPPVVVI--DSDEEDDDGERQLVIDEQDDEQAETDVKQEVERTGFTIQTLPSSGALQITI 1801
            |.|. |||.|.|  ||....:...||::               ..::...|...|...|.:.:..
  Rat   219 NADSPVPPRVYIHPDSPASGETWMRQVI---------------SFDKLKLTNNELDDQGHIILHS 268

  Fly  1802 SDSAETSSHPAKDVNTCHFSGGFMPFIANVPAKFGETA---PTTQFLTPQVQVTTSQSGPETLTS 1863
            ....:...|..:  ..|   |..:..|..||:..|..|   |.|.|.|    ||..|:  :.:|.
  Rat   269 MHKYQPRVHIIR--KDC---GDDLSPIKPVPSGEGVKAFSFPETVFTT----VTAYQN--QQITR 322

  Fly  1864 SSSSHLPASK----SAYPKIN-ESLQELFSSGVPPGGITITKVDSQEKTLPNETVQVVKNKKSIA 1923
            ......|.:|    |...::. |:|.|.::...|           ..:||..|.           
  Rat   323 LKIDRNPFAKGFRDSGRNRMGLEALVESYAFWRP-----------SLRTLTFED----------- 365

  Fly  1924 ITGIHKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPP---IRPGATTQPKTLVRLYPKPALAA 1985
            |.||.||...::|:....|....|...|...|.|..:.|   :.|. |:|   |..:.|....|.
  Rat   366 IPGIPKQGNTSSSALLPGTGNGVPAAHPHLLSGSSCSSPAFHLGPN-TSQ---LCSMAPADYSAC 426

  Fly  1986 GRKSLPAN------AKT----------PVATPRQSQPVACDKP----------------PLVSGS 2018
            .|..|..|      |:|          ..|.||....|:...|                |..|.|
  Rat   427 ARSGLALNRYSTSLAETYNRLTNQSSETFAPPRTPSYVSVSSPSVNMSMGGTDGDTFSCPQTSLS 491

  Fly  2019 TLPALVEPSARKSLPSKPLAA--------GEHLRPRQSLPAKV-----TANPPAAARPDAASTSA 2070
            ...:.:.|..:..:||....|        |.:...|...|..:     :.:|..||.|:...:|.
  Rat   492 MQISGMSPQLQYIIPSPSSNAFAANQTHQGSYNTFRLHSPCALYGYNFSTSPKLAASPEKIVSSQ 556

  Fly  2071 QNLTNVSKAQLAKEEICYGIMVAKD-LPRFRAKVEGSDFMIKIPEHGVFRFKTFG---LAASFLS 2131
            .:....|.:         |.|..:. ||    .|||...:....:...|..:|.|   |::|.:|
  Rat   557 GSFLGSSPS---------GTMTDRQMLP----PVEGVHLLGSGNQQSFFDSRTLGSLTLSSSQVS 608

  Fly  2132 RHV 2134
            .|:
  Rat   609 AHM 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241 33/162 (20%)
Tbx18NP_001101643.1 T-box_TBX15_18_22-like 143..336 CDD:410317 32/142 (23%)
Blue background indicates that the domain is not in the aligned region.

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