DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx20

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001388019.1 Gene:Tbx20 / 315497 RGDID:1309396 Length:446 Species:Rattus norvegicus


Alignment Length:443 Identity:91/443 - (20%)
Similarity:147/443 - (33%) Gaps:107/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1481 KRKSQADERLLPSGPSMTKSSKPSAGGYPIAASVATSTTSAFASSSGKSTPVCTAKTNSASTKNK 1545
            |.|..|:..:.|....:.|||    ...|:....:....:.|....|.|     ..::|..|:..
  Rat    30 KEKEAAENTIKPLEQFVEKSS----CAQPLGELTSLDAHAEFGGGGGSS-----PSSSSLCTEPL 85

  Fly  1546 SSATGIRSNIEFRKVNHNDVDELQIPELHQTDHRWVVLDIFDDF--SHIFVPSFSDMISLTRIHS 1608
            ...|.|..:.|..|:    ...|:..||      |   |.|.:.  ..|...|...|....|: |
  Rat    86 IPTTPIIPSEEMAKI----ACSLETKEL------W---DKFHELGTEMIITKSGRRMFPTIRV-S 136

  Fly  1609 VMQVAEERQKVVKLQFFP--NAPYD-AF----------VTPSSKKKIYFGPLSLDMPPPVLVLLQ 1660
            ...|..|.:.:|.:...|  |..|. |:          ..|....::|..|.|......:|..:.
  Rat   137 FSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMV 201

  Fly  1661 SVDR-KMMLREVYQREHSIPVQRHRRSMAFWVLQINGQVHFEIDTESTAKLAAQQKNAIGTPPGL 1724
            |.:: |:...|:.|..|.|....|:         ...:||.....:.||.|...:.....|    
  Rat   202 SFEKVKLTNNELDQHGHIILNSMHK---------YQPRVHIIKKKDHTASLLNLKSEEFRT---- 253

  Fly  1725 NVLKIPSQLSVEIEKNQDEVPPVVVIDSD---EEDDDGERQLVIDEQDDEQ-------AETDVKQ 1779
              ...|..:...:...|:::...:.|||:   :...|..|...|:.:..|.       |.:.::.
  Rat   254 --FIFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDIERESVESLIQKHSYARSPIRT 316

  Fly  1780 --EVERTGFTIQTLPSSGALQITISDSAETSS------------HP----AKDVNTCHFS----- 1821
              |.:..|...||.|:.|: ..|.||:...||            ||    |...:|...:     
  Rat   317 YGEEDVLGEESQTTPNRGS-AFTTSDNLSLSSWVSSSSSFPGFQHPQPLTALGTSTASIATPIPH 380

  Fly  1822 ---GGFMPFIANVPAKFGETAPTTQFLTPQVQVTTSQ-SGPETLTSSSSSHLP 1870
               |...|:     ::.|..      |||....::.| |||    :..|.|:|
  Rat   381 PIQGSLPPY-----SRLGMP------LTPSAIASSMQGSGP----TFPSFHMP 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241
Tbx20NP_001388019.1 T-box_TBX20-like 100..289 CDD:410319 41/217 (19%)
P-loop containing Nucleoside Triphosphate Hydrolases <320..>408 CDD:476819 21/99 (21%)
Blue background indicates that the domain is not in the aligned region.

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