DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ocm and bi

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster


Alignment Length:429 Identity:79/429 - (18%)
Similarity:127/429 - (29%) Gaps:136/429 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1784 TGFTIQTLPSSGALQITISDSAETSSHPAKDVNTCHFSGGFMPFIANVPAKFGETAPTTQFLTPQ 1848
            |.|::.:|.::|:......::...:::...:.||...:......:|..|...|..      |:||
  Fly    38 TDFSVSSLLTAGSNNNNSGNTNSGNNNSNSNNNTNSNTNNTNNLVAVSPTGGGAQ------LSPQ 96

  Fly  1849 VQVTTSQSGPETLTSSSSSHLPASKSAYPKINESLQELFSSGVPPGGITITKVDSQEKTLPNETV 1913
            ...::|.:...:.|::|||:...:.|.:...|                             |.|.
  Fly    97 SNHSSSNTTTTSNTNNSSSNNNNNNSTHNNNN-----------------------------NHTN 132

  Fly  1914 QVVKNKKSIAITGIHKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQPKTLVRLY 1978
            ....|..:.:                          :.|...:|....|..| |.|.|.|:|.|.
  Fly   133 NNNNNNNNTS--------------------------QKQGHHLSTTEEPPSP-AGTPPPTIVGLP 170

  Fly  1979 PKPALAAGRKSLPANAKTPVATPRQSQPVACDKPPLVSGSTLPALVEPSARKSLPSKPLAAGEHL 2043
            |.|.......|..:|.....|......|.|....| .:|:..|    |:....||  |.....||
  Fly   171 PIPPPNNNSSSSSSNNSASAAAHPSHHPTAAHHSP-STGAAAP----PAGATGLP--PPTPPHHL 228

  Fly  2044 RPRQSLPAKVTANP----PAAARPDAASTSA----------------------QNLTNVSKAQLA 2082
            :.:|.........|    ||||....|.:.|                      .:..::..|...
  Fly   229 QQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHPGLYPGGGLRFPPHHPGAHPHAHHLGSAYTT 293

  Fly  2083 KEEICYGIMVAKDL-PRFR-----------------AKVEGSDFMIKIPEHGV------------ 2117
            .|::.....||..| |..|                 ..:||.|...|..:.|.            
  Fly   294 AEDVVLASAVAHQLHPAMRPLRALQPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMF 358

  Fly  2118 --FRFKTFGLAASFLSRHVAKDPKLKQFLPAE---WKFH 2151
              .:|:..||.|.      ||...|...:.|:   :|||
  Fly   359 PQMKFRVSGLDAK------AKYILLLDIVAADDYRYKFH 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241 27/119 (23%)
biNP_001259238.1 Optomotor-blind <260..318 CDD:337907 7/57 (12%)
T-box_TBX2_3-like 326..513 CDD:410314 16/72 (22%)
Blue background indicates that the domain is not in the aligned region.

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