DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx21

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001100513.1 Gene:Tbx21 / 303496 RGDID:1308264 Length:528 Species:Rattus norvegicus


Alignment Length:495 Identity:96/495 - (19%)
Similarity:160/495 - (32%) Gaps:149/495 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1629 PYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVDRKMMLREVYQREHSIPVQRHRRSMAFWVLQ 1693
            |.|.:..|..:..:|.||                          :.::::|..          |:
  Rat   103 PVDGYAAPDPRAGLYPGP--------------------------REDYALPAG----------LE 131

  Fly  1694 INGQVHFEIDTEST-AKLAAQQKNAIGTPPGLNVLKIPS--QLSVEIEKNQDEVPPVVVIDSD-- 1753
            ::|::...:..... :|....|...|.|..|..:....|  ...:|...:......||::|..  
  Rat   132 VSGKLRVALSNHLLWSKFNQHQTEMIITKQGRRMFPFLSFTVAGLEPTSHYRMFVDVVLVDQHHW 196

  Fly  1754 -------------EEDDDGERQLVIDEQDDEQAETDVKQEVERTGFTIQTLPSSGALQITISDSA 1805
                         |....|.|..|..:..:..|.. ::|||           |.|.|::|.:..|
  Rat   197 RYQSGKWVQCGKAEGSMPGNRLYVHPDSPNTGAHW-MRQEV-----------SFGKLKLTNNKGA 249

  Fly  1806 ETSSHPAKDVNTCHFSGGFMPFIANVPAKFGE------------TAPTTQFLTPQVQVTTSQSGP 1858
            ..:......:.:.|   .:.|.:..|....||            |...|||    :.||..|:. 
  Rat   250 SNNVTQMIVLQSLH---KYQPRLHIVEVNDGEPEAACSANTHIFTFQETQF----IAVTAYQNA- 306

  Fly  1859 ETLTSSSSSHLPASKSAYPKINESLQELFSS-----GVPPG-GITITKVDSQEKTLPNETVQVVK 1917
             .:|.....:.|.:|.    ..|:.:.:::|     ..||| ...:...|.....|.|:  ..|.
  Rat   307 -EITQLKIDNNPFAKG----FRENFESMYTSVDTSVPSPPGPNCQLLGGDPYSPLLSNQ--YPVS 364

  Fly  1918 NKKSIAITGIHKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQPKTLVRLYPKPA 1982
            ::....:.|..|.:   .|.:..:...|.|..:.:..:|| |.|...|.|   |.|.|..|..| 
  Rat   365 SRFYPDLPGQPKDM---VSQSYWLGTPREPSYETEFRAVS-VKPTFLPSA---PGTTVPYYRGP- 421

  Fly  1983 LAAGRKSLPANAKTPVATPRQSQPVACDKPPLVSGS-------TLPALVEP----SARKSLPS-- 2034
                          .|..|....|:|...||.:|.:       |||  ::|    |..:..||  
  Rat   422 --------------DVLAPGAGWPMAPQYPPKMSPAGWFRTMRTLP--MDPGLGSSEEQGSPSLW 470

  Fly  2035 --------KP----LAAGEHLRPRQS-LPAKVTANPPAAA 2061
                    :|    |..|:..|.|.| .|:...::.||.|
  Rat   471 TEVTSLQPEPSDSGLGEGDTKRRRISPYPSSGDSSSPAGA 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241 35/145 (24%)
Tbx21NP_001100513.1 T-box_TBX21 135..324 CDD:410329 38/213 (18%)
T-box_assoc <392..518 CDD:465042 35/140 (25%)
Blue background indicates that the domain is not in the aligned region.

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