DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx21

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001100513.1 Gene:Tbx21 / 303496 RGDID:1308264 Length:528 Species:Rattus norvegicus


Alignment Length:495 Identity:96/495 - (19%)
Similarity:160/495 - (32%) Gaps:149/495 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1629 PYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVDRKMMLREVYQREHSIPVQRHRRSMAFWVLQ 1693
            |.|.:..|..:..:|.||                          :.::::|..          |:
  Rat   103 PVDGYAAPDPRAGLYPGP--------------------------REDYALPAG----------LE 131

  Fly  1694 INGQVHFEIDTEST-AKLAAQQKNAIGTPPGLNVLKIPS--QLSVEIEKNQDEVPPVVVIDSD-- 1753
            ::|::...:..... :|....|...|.|..|..:....|  ...:|...:......||::|..  
  Rat   132 VSGKLRVALSNHLLWSKFNQHQTEMIITKQGRRMFPFLSFTVAGLEPTSHYRMFVDVVLVDQHHW 196

  Fly  1754 -------------EEDDDGERQLVIDEQDDEQAETDVKQEVERTGFTIQTLPSSGALQITISDSA 1805
                         |....|.|..|..:..:..|.. ::|||           |.|.|::|.:..|
  Rat   197 RYQSGKWVQCGKAEGSMPGNRLYVHPDSPNTGAHW-MRQEV-----------SFGKLKLTNNKGA 249

  Fly  1806 ETSSHPAKDVNTCHFSGGFMPFIANVPAKFGE------------TAPTTQFLTPQVQVTTSQSGP 1858
            ..:......:.:.|   .:.|.:..|....||            |...|||    :.||..|:. 
  Rat   250 SNNVTQMIVLQSLH---KYQPRLHIVEVNDGEPEAACSANTHIFTFQETQF----IAVTAYQNA- 306

  Fly  1859 ETLTSSSSSHLPASKSAYPKINESLQELFSS-----GVPPG-GITITKVDSQEKTLPNETVQVVK 1917
             .:|.....:.|.:|.    ..|:.:.:::|     ..||| ...:...|.....|.|:  ..|.
  Rat   307 -EITQLKIDNNPFAKG----FRENFESMYTSVDTSVPSPPGPNCQLLGGDPYSPLLSNQ--YPVS 364

  Fly  1918 NKKSIAITGIHKQVTKAASSTATVTAARAPVVKPQSTSVSKVAPPIRPGATTQPKTLVRLYPKPA 1982
            ::....:.|..|.:   .|.:..:...|.|..:.:..:|| |.|...|.|   |.|.|..|..| 
  Rat   365 SRFYPDLPGQPKDM---VSQSYWLGTPREPSYETEFRAVS-VKPTFLPSA---PGTTVPYYRGP- 421

  Fly  1983 LAAGRKSLPANAKTPVATPRQSQPVACDKPPLVSGS-------TLPALVEP----SARKSLPS-- 2034
                          .|..|....|:|...||.:|.:       |||  ::|    |..:..||  
  Rat   422 --------------DVLAPGAGWPMAPQYPPKMSPAGWFRTMRTLP--MDPGLGSSEEQGSPSLW 470

  Fly  2035 --------KP----LAAGEHLRPRQS-LPAKVTANPPAAA 2061
                    :|    |..|:..|.|.| .|:...::.||.|
  Rat   471 TEVTSLQPEPSDSGLGEGDTKRRRISPYPSSGDSSSPAGA 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Tbx21NP_001100513.1 T-box 138..324 CDD:279278 38/210 (18%)
T-box_assoc <392..518 CDD:292794 35/140 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335244
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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