DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx2

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:XP_017452798.2 Gene:Tbx2 / 303398 RGDID:1311014 Length:711 Species:Rattus norvegicus


Alignment Length:425 Identity:83/425 - (19%)
Similarity:123/425 - (28%) Gaps:162/425 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   916 AAAAAAAAAAAAAAAASAKISAPALSEPCFVKDTDLAKLKHCFVGLRRLSNVENLATFCMTHQLY 980
            |.||||||||||||.|...:||.....|.    ..|..||    .|.....||:           
  Rat    58 AGAAAAAAAAAAAAEAGLHVSALGPHPPA----AHLRSLK----SLEPEDEVED----------- 103

  Fly   981 KCFCGGDSPDGKPVVIEKDQWNAPVTHFNPDLAVRAHYSFERPPEETSTKKKGKEKKPKHK---- 1041
                     |.|..:..|:.|:                .|.:...|....|.|:...|..|    
  Rat   104 ---------DPKVTLEAKELWD----------------QFHKLGTEMVITKSGRRMFPPFKVRVS 143

  Fly  1042 -LESKSS----NDVADQKPQTQAVETLPLKTESKQEPP-PANSLFKDESP--------------- 1085
             |:.|:.    .|:...................|.:|. |.......:||               
  Rat   144 GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHK 208

  Fly  1086 LKRSNELNKIFNYFRSRPDVCRRAISIPKNSYQRLNQRRADRVRHQIAREESLKTNEMLKMRIQG 1150
            ||.:|.::                   .|:.:..||.....:.|..|.|     .|::||:....
  Rat   209 LKLTNNIS-------------------DKHGFTILNSMHKYQPRFHIVR-----ANDILKLPYST 249

  Fly  1151 ------------AVVYYRKE------ID--------------RQRKRELSKKPVIEVRN------ 1177
                        ||..|:.:      ||              |:.||:....|.:.:..      
  Rat   250 FRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLTLPTLRLYEEHCKPE 314

  Fly  1178 ----ESDAS--DASVRQKKIETPAEGPTPGKRIKLKADEPPAQEKKAHMLDIQVPRIAACYSLNT 1236
                |||||  |....::...:|:..|:|.:..:.:|:|.|.                      .
  Rat   315 RDGAESDASSCDPPPAREPPPSPSAAPSPLRLHRARAEEKPC----------------------A 357

  Fly  1237 ASVDVLAPDMAKEATTSAAATGSTHGSTDTNSANV 1271
            |..|   |:..:.....|||......|.|.:.|.:
  Rat   358 ADSD---PEPERSGEERAAAPLGRSSSRDASPARL 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
Tbx2XP_017452798.2 T-box_TBX2_3-like 103..287 CDD:410314 35/243 (14%)
TBX 305..381 CDD:403708 18/100 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335234
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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