DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and Tbx2

DIOPT Version :10

Sequence 1:NP_611894.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_001388735.1 Gene:Tbx2 / 303398 RGDID:1311014 Length:711 Species:Rattus norvegicus


Alignment Length:425 Identity:83/425 - (19%)
Similarity:123/425 - (28%) Gaps:162/425 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   916 AAAAAAAAAAAAAAAASAKISAPALSEPCFVKDTDLAKLKHCFVGLRRLSNVENLATFCMTHQLY 980
            |.||||||||||||.|...:||.....|.    ..|..||    .|.....||:           
  Rat    58 AGAAAAAAAAAAAAEAGLHVSALGPHPPA----AHLRSLK----SLEPEDEVED----------- 103

  Fly   981 KCFCGGDSPDGKPVVIEKDQWNAPVTHFNPDLAVRAHYSFERPPEETSTKKKGKEKKPKHK---- 1041
                     |.|..:..|:.|:                .|.:...|....|.|:...|..|    
  Rat   104 ---------DPKVTLEAKELWD----------------QFHKLGTEMVITKSGRRMFPPFKVRVS 143

  Fly  1042 -LESKSS----NDVADQKPQTQAVETLPLKTESKQEPP-PANSLFKDESP--------------- 1085
             |:.|:.    .|:...................|.:|. |.......:||               
  Rat   144 GLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHK 208

  Fly  1086 LKRSNELNKIFNYFRSRPDVCRRAISIPKNSYQRLNQRRADRVRHQIAREESLKTNEMLKMRIQG 1150
            ||.:|.::                   .|:.:..||.....:.|..|.|     .|::||:....
  Rat   209 LKLTNNIS-------------------DKHGFTILNSMHKYQPRFHIVR-----ANDILKLPYST 249

  Fly  1151 ------------AVVYYRKE------ID--------------RQRKRELSKKPVIEVRN------ 1177
                        ||..|:.:      ||              |:.||:....|.:.:..      
  Rat   250 FRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLTLPTLRLYEEHCKPE 314

  Fly  1178 ----ESDAS--DASVRQKKIETPAEGPTPGKRIKLKADEPPAQEKKAHMLDIQVPRIAACYSLNT 1236
                |||||  |....::...:|:..|:|.:..:.:|:|.|.                      .
  Rat   315 RDGAESDASSCDPPPAREPPPSPSAAPSPLRLHRARAEEKPC----------------------A 357

  Fly  1237 ASVDVLAPDMAKEATTSAAATGSTHGSTDTNSANV 1271
            |..|   |:..:.....|||......|.|.:.|.:
  Rat   358 ADSD---PEPERSGEERAAAPLGRSSSRDASPARL 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_611894.1 MGA_dom 771..821 CDD:464998
PRK12323 <1933..>2053 CDD:481241
Tbx2NP_001388735.1 T-box_TBX2_3-like 103..287 CDD:410314 35/243 (14%)
TBX 305..379 CDD:432659 18/98 (18%)
Blue background indicates that the domain is not in the aligned region.

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