DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and tbx-40

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_502852.1 Gene:tbx-40 / 190679 WormBaseID:WBGene00006559 Length:380 Species:Caenorhabditis elegans


Alignment Length:392 Identity:69/392 - (17%)
Similarity:119/392 - (30%) Gaps:119/392 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1487 DERLLPSGPSM-----TKSSKP-------------SAGGYPIAASVATSTTSAFASSSGKSTPVC 1533
            ::|.|...|:|     .|..||             ....|.:..|:.......:...:||..|  
 Worm    14 EDRWLTQYPNMEMIVNNKGPKPIFPELNFNITGLEEKSRYVVLLSIQKFDNIRYGFKNGKWGP-- 76

  Fly  1534 TAKTNSASTKNKS-----SATGIRSNIEFRKVNHNDVDELQIPELHQTDHRWVVLD----IFDDF 1589
             :|...|:.|.:.     ...|.:...|..|      :.::...:..|:|: ..:|    .|.:.
 Worm    77 -SKVRHATKKEQEIKYFLHPDGTKLGEELMK------ETIKFDTVRITNHK-KFMDKDNVFFVET 133

  Fly  1590 SHIFVPSFSDMISLTRIHSVMQVAEERQKVVKLQFFPNAPYDAFVTPSSKKKIYFGPLSLDMPPP 1654
            .|.:||..: :.::|.:.|    |....::...||||       ||                   
 Worm   134 MHKYVPVLT-VKNITNVES----ANHSMRMEVAQFFP-------VT------------------- 167

  Fly  1655 VLVLLQSVDRKMMLREVYQREHSIPVQRHRRSMAFWVLQINGQVHFEIDTESTAKLAAQQKNAIG 1719
                            ||.:|          |:..|..:.:....||...:...|    :||.  
 Worm   168 ----------------VYNQE----------SIGNWKSKFHKNATFENRLDGGNK----RKNT-- 200

  Fly  1720 TPPGLNVLKIPSQLSVEIEKNQDEVPPVVVI-------DSDEEDDDGERQLVIDEQDDEQAETDV 1777
                 |..:.||.   :..||:.|:..:.::       :.:|..:.|..|..|.....:...|..
 Worm   201 -----NSREEPSS---KRSKNETEIAVLDILQVASQSENYNESTNSGRLQNEISSSIHQFPSTSY 257

  Fly  1778 KQEVERTGFTIQTLPSSGALQITISDSAETSSHPAKDVN---TCHFSGGFMP-FIANVPAKFGET 1838
            :.:......|:.|.|..........|..:...:|..|.|   .|......:| |..|..|.|...
 Worm   258 QNQYPHAYPTVNTPPIYAQQFPAPFDEKQNQFYPKTDENLAPNCAQDASSLPNFAMNQKASFANQ 322

  Fly  1839 AP 1840
            .|
 Worm   323 YP 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
tbx-40NP_502852.1 T-box 24..186 CDD:279278 36/228 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159251
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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