DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and mls-1

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:NP_498640.1 Gene:mls-1 / 186741 WormBaseID:WBGene00003376 Length:252 Species:Caenorhabditis elegans


Alignment Length:223 Identity:43/223 - (19%)
Similarity:77/223 - (34%) Gaps:76/223 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1625 FPNAPYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVDRKMMLREVYQREHSIPVQRHRRSMAF 1689
            |.|...:..||.|.::          |.|.:.|::..:|               ||:      ::
 Worm    44 FHNLGTEMIVTKSGRR----------MFPTLSVIIAGLD---------------PVK------SY 77

  Fly  1690 WVLQINGQVHFEIDTESTAKLAAQQKNAIGTPPGLNVLKIPSQLSVEIEKNQDEVP--------- 1745
            .|:     |..|.......:.:..|...|.|.||.:  ::||::.|..:.     |         
 Worm    78 VVM-----VDLECIEMKRFRYSFHQSKWISTGPGES--ELPSRMFVHTDS-----PARGAHWMRA 130

  Fly  1746 PV----VVIDSDEEDDDGE-----------RQLVIDEQDDEQAETDVKQEVERTGFTIQTLPSSG 1795
            ||    :.:.:::.|::|.           |..:|::.|.::..|...:|.|....|        
 Worm   131 PVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHIIEQDDSQKRHTFSFEETEFIAVT-------- 187

  Fly  1796 ALQITISDSAETSSHP-AKDVNTCHFSG 1822
            |.|.....|.:..|:| ||....|...|
 Worm   188 AYQNHRITSLKIESNPFAKGFRECEVQG 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
mls-1NP_498640.1 TBOX 31..212 CDD:238106 41/218 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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