DRSC/TRiP Functional Genomics Resources

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Protein Alignment ocm and tbx3b

DIOPT Version :9

Sequence 1:NP_001188998.1 Gene:ocm / 37874 FlyBaseID:FBgn0266083 Length:2175 Species:Drosophila melanogaster
Sequence 2:XP_002662050.2 Gene:tbx3b / 100334188 ZFINID:ZDB-GENE-060531-144 Length:594 Species:Danio rerio


Alignment Length:533 Identity:103/533 - (19%)
Similarity:169/533 - (31%) Gaps:171/533 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1546 SSATG---IRSNIEFRKVN-HNDVDELQIPELHQTDHRWVVLDIFDDFSHIFVPSFSDMISLTRI 1606
            |.:||   :...:.|.|:. .|::.:         .|.:.:|:..    |.:.|.|    .:.|.
Zfish   159 SPSTGEQWMSKAVTFHKLKLTNNISD---------KHGFTILNSM----HKYQPRF----HIVRA 206

  Fly  1607 HSVMQVAEERQKVVKLQFFPNAPYDAFVTPSSKKKIYFGPLSLDMPPPVLVLLQSVD-----RKM 1666
            :.|:::.   ....|...||...:.| ||....:||  ..|.:|..|......::.:     ||.
Zfish   207 NDVLKLP---YSTFKTYVFPETEFIA-VTAYQNEKI--TQLKIDNNPFAKGFRETGNGRREKRKQ 265

  Fly  1667 MLR---EVYQREHSIPVQR---HRRSMAFWVLQINGQVHFEIDTESTAKLAAQQKNAIGTPPGLN 1725
            ||.   ||..::.|:....   .:.|..:.:.:.|.......||..:      ..:..|.....|
Zfish   266 MLHQRCEVEPKKASVLTDDSSFDQISSNYLIQESNVVTSTSTDTNES------DIDGFGDEKESN 324

  Fly  1726 VLKIPSQLSVEIEKNQDEVPPVVVIDSDEEDDD-GERQLVIDEQDDEQAETDV-----KQEVERT 1784
            .::....:|.: |:|..|:...|....|:.::: |:|...|:.:.....|...     |:..|:.
Zfish   325 EVESIQSISQD-EQNSREISTTVQESKDDPNEEIGDRNPEINSKKQHSVEQPAHLPLDKKHAEQQ 388

  Fly  1785 GFTIQT--------------LPSSGALQITISDSAETSSHPAKDVNTCHFS-GGFMPFIAN---- 1830
            .|....              .|:.|.:     :|....||...  |.|.|: .|.:|.:|:    
Zfish   389 KFAADVTDASQKDSLARHFYFPTPGLI-----NSLRLPSHVLS--NLCQFNYVGTLPLLASEATG 446

  Fly  1831 --VPAKFGETAPTTQFLTPQVQVTTSQSGPETLTSSSSSHLPASKSAYPKINESLQELFSSGVPP 1893
              :|.:..|               ....|..|..|||...|...:...|...:  ..:.|.||  
Zfish   447 SWIPRRSNE---------------GEGQGYTTSVSSSQQRLTGMQDLPPNFQQ--HRMTSQGV-- 492

  Fly  1894 GGITITKVDSQEKTLPNETVQVVKNKKSIAITGIHKQ---VTKAASSTATVTAARAPVVKPQSTS 1955
                  .|.:|....|                  :.|   .|.|.||    :||...|.:....:
Zfish   493 ------LVSAQGNIFP------------------YPQDYMTTSAGSS----SAASYQVHRQPFFN 529

  Fly  1956 VSKVAPPIRPGATTQPKTLVRLYPKPALAAGRKSLP-------------ANAKTPVATPRQSQPV 2007
            :| ..|..||            ||.|....||| :|             .|....:|||      
Zfish   530 IS-YRPQCRP------------YPVPVWVHGRK-IPQTTSVLIPYGETDINEHASIATP------ 574

  Fly  2008 ACDKPPLVSGSTL 2020
                     ||||
Zfish   575 ---------GSTL 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocmNP_001188998.1 DUF4801 771..821 CDD:292677
tbx3bXP_002662050.2 TBOX 74..256 CDD:238106 24/119 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574519
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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