DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nop60B and trub1

DIOPT Version :9

Sequence 1:NP_001014547.1 Gene:Nop60B / 37873 FlyBaseID:FBgn0259937 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001122159.1 Gene:trub1 / 556642 ZFINID:ZDB-GENE-080723-73 Length:290 Species:Danio rerio


Alignment Length:258 Identity:59/258 - (22%)
Similarity:101/258 - (39%) Gaps:64/258 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LAHGSSPLNRDIKEYMKT-GFINLDKPSNPSSHEVVAWIKKILKVE---------------KTGH 118
            :|..|:..|..:.:.... |...:.|...|:|.:|:..:||.|..|               |.||
Zfish     1 MAGASTVQNSSLSKLQSLHGIFAIHKKKGPTSADVLNILKKTLLKEAGVTNFNPRKRKQPFKIGH 65

  Fly   119 SGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAIFKLHGAVESV-----------------AK 166
            .||||...:|.|:|.|...|:::.:..:..|:|.|..:|..|.:::                 ..
Zfish    66 GGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYTAFGELGKATDTLDVTGNVVEEKSYDHITKEA 130

  Fly   167 VRQGLEKLRGALFQRPPLISAVKRQ------------------LRVRTVYDSKLLDYDETRNMGV 213
            ..:.:::..|.:.|.|||.||:|:.                  .|..|||:..|.|:...  :..
Zfish   131 FEEKMKQFTGEIMQVPPLYSALKKDGKRMSVLLKQGQEVEAKPARPVTVYNLSLEDFSPP--LFT 193

  Fly   214 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSG--------IQSERDGMVTMHDVLDAM 268
            ..|.|..|.|:|::...||..|.....:.||.|.:.|        ::.:|   .|:.|:..|:
Zfish   194 IDVECGGGFYVRSLIDDLGKALSSCAHIKELTRTKQGQFTLEEHALKEDR---WTLTDISQAL 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nop60BNP_001014547.1 DKCLD 47..104 CDD:285330 7/34 (21%)
CBF5 54..379 CDD:273073 59/258 (23%)
PseudoU_synth_hDyskerin 86..268 CDD:211338 55/240 (23%)
PUA 295..368 CDD:279774
trub1NP_001122159.1 PseudoU_synth 20..279 CDD:294089 56/239 (23%)
TruB 20..236 CDD:129523 52/217 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0130
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100327
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.710

Return to query results.
Submit another query.