DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4049 and swsn-4

DIOPT Version :10

Sequence 1:NP_611885.3 Gene:CG4049 / 37860 FlyBaseID:FBgn0034976 Length:1669 Species:Drosophila melanogaster
Sequence 2:NP_502082.1 Gene:swsn-4 / 178015 WormBaseID:WBGene00004204 Length:1474 Species:Caenorhabditis elegans


Alignment Length:173 Identity:32/173 - (18%)
Similarity:55/173 - (31%) Gaps:43/173 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 YGPPP---PTVYGPPAREYGPPPKLITKNVY---VHVPP-----EEPTEIVKSPVLEAPIPKKHY 108
            :.|||   .|::.|.:..|.||......|.|   ::.||     ..|....:..|..:.......
 Worm    11 HNPPPFDLGTIFKPSSNPYPPPTGPFLNNQYNQQLYAPPGIAAQPSPVNQTQQDVSSSSSATNLQ 75

  Fly   109 KIIFIKAPAPPAPIKQVIPPQPQDEHKTLVYVLV---------------------KKPEDPAPLE 152
            ....:..|.||     :.|..|:..|....::|.                     ..|....|:.
 Worm    76 PQRTLSYPTPP-----LNPQSPRVNHNPGTHILALLNNGGAVANQEPSHHNEIARAFPGGSGPIH 135

  Fly   153 IPVPETTEPNK----PEVYFIKYK-EGEKEPHKQYGPPAPAYG 190
            :|..:..:..:    ..||.:..: :||.:|..:. .|...||
 Worm   136 VPSGKMPKGRRLVGEHAVYDVDVRLQGEIQPQLEV-TPITKYG 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4049NP_611885.3 DEXHc_ARIP4 391..653 CDD:350827
HepA <392..1121 CDD:440319
swsn-4NP_502082.1 QLQ 88..116 CDD:462622 4/27 (15%)
HSA 272..344 CDD:214727
BRK 403..446 CDD:462196
PLN03142 472..1288 CDD:215601
Blue background indicates that the domain is not in the aligned region.

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