DRSC/TRiP Functional Genomics Resources

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Protein Alignment snama and rbbp6

DIOPT Version :9

Sequence 1:NP_611884.1 Gene:snama / 37857 FlyBaseID:FBgn0086129 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_031748649.1 Gene:rbbp6 / 394578 XenbaseID:XB-GENE-6456653 Length:2085 Species:Xenopus tropicalis


Alignment Length:1888 Identity:428/1888 - (22%)
Similarity:646/1888 - (34%) Gaps:719/1888 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITNAQSKEEYKDDGFLIPKN 67
            |||||.|.||:||:||||||||:.|||::|:.::|| |..|.||||||||::|||.|:..|||||
 Frog     4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGRERL-KATDCDLQITNAQTQEEYTDETVLIPKN 67

  Fly    68 TTLIISRIPI--AHPTKKGWEPPAAENAFSAAPAKQDNFNMDLSKMQGT---------EEDKIQA 121
            :::|:.||||  .....|.:.....|.....:.:.:|..::.|:::..|         |||||:|
 Frog    68 SSVIVRRIPIGGVKTASKSYVISRTEPQSGTSKSIEDASSISLAQLTKTANLVEANASEEDKIKA 132

  Fly   122 MMMQSTVDYDPKTYHRIKGQSQVGEVPASYRCNKCKKSGHWIKNCPFVGGKDQQEV---KRNTGI 183
            ||.||..:|||..|.:    ..:|..|.||.|.:|.|.||:|||||..|.|:.:.|   |::|||
 Frog   133 MMSQSGHEYDPINYMK----KPLGPPPPSYTCFRCLKPGHYIKNCPTNGDKNFESVPRIKKSTGI 193

  Fly   184 PRSF----------------------------------RDKPDAAENESADFVLPAVQNQE---I 211
            ||||                                  ::||.....|      ||..:::   |
 Frog   194 PRSFMVEVEDPNMKGAMLTNTGKYAIPTIDAVAYAIGKKEKPPFLPEE------PASSSEDEDPI 252

  Fly   212 PEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESEDSECPDCKEKNCSPGSLIPNRFLRNS 276
            |::|:|.||:|:..|||:|||||:|:||:|:||:||||||..||.|.:.:.||.:||.|:|||.:
 Frog   253 PDELLCLICKDMMSDAVVIPCCGNSYCDECIRTALLESEDHICPTCHQPDVSPDALIANKFLRQA 317

  Fly   277 VNAFKNETGYNKSAAK-----------PAAVKNEEKPPVEKEVEKK-----------PVAEVEPE 319
            ||.|||||||.|...|           |||..::..||......::           |.|...|.
 Frog   318 VNNFKNETGYTKRIRKQQSASSQRQPLPAASSSKALPPSRPLTSRQQDPLIAPAASTPAANPAPA 382

  Fly   320 ET-EVKPEKQKESETN-------------GSNPPKSESP--EPPATTEPSQKEKDKYDSDYEDNI 368
            .| ..:|.....::.|             .|.||::.||  .|||...|:.||::|         
 Frog   383 STAPSQPTATAATQANPAAAAPPAAPLPAASVPPRAVSPTDPPPALPLPAPKEREK--------- 438

  Fly   369 TIKMPQPAADSTTVPSKRSPSYSHR----------SESSHRRDRSDYVS--------DHDHKHQR 415
                |:|...|....:.||.|.|..          |.:||..::..:|.        .|.|....
 Frog   439 ----PEPLFHSHEKVNARSNSSSSAPVTTASCLPLSNASHLGEKGFHVPVLGQLPSLVHSHPALP 499

  Fly   416 PSKSESVNKDRSLLPLPIGTLPSYQGHMMAESEEARRSS--------AY----KPPYMQMQRGPP 468
            |....::::..:..|| :|.....:|.........|..:        ||    .||...    ||
 Frog   500 PLLRTNIHRLSAPRPL-LGWDSLNRGRHPHNDRPPRNQNPSLGSSGPAYVHTPPPPLFP----PP 559

  Fly   469 PMHMMSHHMPAYNNGFNNMGQRPPL-------SYVPYQNQSVHPMRAPYGSAGGGMNMNMSQPFQ 526
            |.|.:|  :|.        |..||.       ...|....||.|...|...|      .:|.|:.
 Frog   560 PPHGLS--LPP--------GVPPPQFPPQFPPGQPPTAGYSVPPPGFPSAPA------TLSAPWV 608

  Fly   527 SPNLASIYQGVAAKVGSGPIDDPL--EAF---NRIMKEKERK--KVDRF---------------- 568
            :|.:.|.:.|........|   ||  |.|   .|.:||:|:|  |:|.|                
 Frog   609 APAVQSAHTGALQTPSLAP---PLSKEEFYREQRRLKEEEKKKSKLDEFTNDFAKELLEYKKIQK 670

  Fly   569 -------------------------------------------RSSDRHRSRSPDRQR------- 583
                                                       ||..|..||||..||       
 Frog   671 ERRRSYSRSKSPFSGSSYSKSSYSYSKSRSCSSRSRSYSRSFSRSRSRSFSRSPSYQRKPHSKGR 735

  Fly   584 ------------------------HRFKSPM---------------------------------- 590
                                    .|.|||:                                  
 Frog   736 PRSRSRSHGYPRSRSRSPSYRRYHSRSKSPVYRLPSPTKRVVPQTEGERSYFNRYRDIPPYDIKA 800

  Fly   591 -----------YEKDN------------------------------SRDNL------------KD 602
                       |:||.                              :|||.            :|
 Frog   801 MYGRQPNVRDTYDKDQYREWEKYRDWYEKYYKDCAINAMPRQRSPMNRDNFSPSRYVIPPQARRD 865

  Fly   603 KRPRSRERKREHSYERH--------------------IRHPRSSRQPNDGS---KSPGGRIKRSG 644
            ..|.:|.|:.|::...|                    ::..|.|::....|   .|.|.:.|:..
 Frog   866 NSPYNRGRREEYTTFTHRGRTLGGSYQEKLLPRDAHIVKDVRRSKEKESASLIGDSKGNKHKKHR 930

  Fly   645 HRRSASPKPGY------------------------------KSD---YRDKPY------------ 664
            .||......|:                              |.|   .||:|.            
 Frog   931 KRRKGDENEGFSKVEALSSRRTRDLHGDDIKRAEPVFVPSSKDDATPVRDEPMDAESIALKPLLE 995

  Fly   665 -NKPSAPKT--EAVEPPPPGFEPLQLTDE----------DGYR-----NKHPTSSEASQSSKGDS 711
             :|...||.  |..:..|.|.:..:.:..          ||.:     |:.|......:|.||:|
 Frog   996 KDKRERPKVKQEKTKRKPDGNQSKKESTSKVVKVERGAGDGDKDKSTVNEPPAKKIKEESQKGES 1060

  Fly   712 SK------------------------------------KRGENRHEEAPRKRHRSRSISKEPKPN 740
            :|                                    |:...:.::||.|..:::..:::|||.
 Frog  1061 TKNPLPQKDDKAALLPRKVHLKMIKENQDGKQAKEDKPKKDHTKQDKAPSKDEKTKKPTEKPKPT 1125

  Fly   741 D--SNYRSLTPPAKITTPKMTAAQLRQRESSP---------------------KTPEKSHDDYLT 782
            :  |..|...|..|::..:.....|:..:..|                     |.|||..|....
 Frog  1126 EPKSEKRKRKPDDKLSDKEQEKTTLKNSKPQPAEAAKPSTSKIKSEVEVQKPEKIPEKEKDRENK 1190

  Fly   783 AKARIMASQPVINDTEMETNVGK------------------------------------------ 805
            .|.:...::....|.|.:.|..|                                          
 Frog  1191 EKEKDRENKEKEKDRENKENKEKEKDRENKEKEKDRENKEKEKDRENKENKEKEKDKEKEKDKEK 1255

  Fly   806 ----------------ENKAKSPLSKDR-KKKKKDKDKAERKKNK--KDKRAKKEKGDRQKKSSS 851
                            |||.|...:|:: |:|:|||:..|::|||  |||.:|:::.|::|...:
 Frog  1256 EKDKEKEKDKEKEKDRENKEKDKENKEKDKEKEKDKENKEKEKNKENKDKESKEKEKDKEKDKEN 1320

  Fly   852 VNRSDSDINNS------------SLMNESNYKVLSPRAQSPSIEINAAQL--------------- 889
            .::.....|..            .|..|:..|:.|.....|..:.:.|:.               
 Frog  1321 KDKEKDKENKEKEKAVSTTGKKIKLNRETGKKIASTEPSGPPDDKDKAEPATAVKSKADRVKGKI 1385

  Fly   890 -------------------------SPTHNATENVNPKSHSILTVGAASDDNLGPRSKLSEANSV 929
                                     ||.....|.|:.|...|.|:...::||..|...:.....|
 Frog  1386 RKKVPAPDGSGSTLVDYTSTSSTGGSPVRKGAEKVDTKRTVIKTMEEYNNDNTTPAEDVIIMIQV 1450

  Fly   930 NLSKWEID------ENILGLEDSS-------------------------------KKAAGASDDP 957
            ..|||:.|      :...|.:|:|                               :|...:.|..
 Frog  1451 PQSKWDKDDYESEEDEAKGSQDASSTGKPISSVVTNVSAKPLSITTPADKDTLPTEKLKSSRDQT 1515

  Fly   958 SEI------------TSDVLRKAEN----AIFAKAINAIRPMEFQVIINSKDNSKDRSVVRSDKD 1006
            :|.            ||....||:.    |...|..:..|.:|.....:|:.:||:|...:.:..
 Frog  1516 NETHPQDTKPSKELSTSSTRSKAKEKDSPAASEKESSEKRKVEGSSERSSRQSSKERQSEKQESS 1580

  Fly  1007 RSSS-----PRRNNSSR--SVKDRLGTKISNDRSRSRDKSKGRRRAARSSDDDA--------NRG 1056
            ||||     |.|...|.  ..|||   |:.:: :|.:||........|..:.|.        .|.
 Frog  1581 RSSSSKDFTPNREKKSEHSDSKDR---KLEHE-TREKDKKSEHDSRDRKQEHDGRDRKQEHDGRD 1641

  Fly  1057 RSDRHGSR--KRDNRSRDRAAPSEKRQERSYKRSSPEDDKLRRQ------NKEQSESKHGKHDQN 1113
            |...|.||  |:::.||||     |::..|..|....|.:.|:|      .|::.:|:..|.:.:
 Frog  1642 RKQEHDSRDQKQEHDSRDR-----KQEHDSRDRKQEHDSRDRKQERDSRDRKQEQDSRDRKQEHD 1701

  Fly  1114 NSDDSDRRAAKNTKSS-DSRVVSSVTAVVAPPKPCRPDNPFRKFVDTSSSSSLVVKYDNTIQK-E 1176
            ..|.......::.|:. |.|  ...|......|....|...:|............::|:..:| |
 Frog  1702 GRDKKTEHDGRDKKTEHDGR--DKKTEHDGRDKKTEHDGRDKKTEHDGREKDKKQEHDSRDKKPE 1764

  Fly  1177 GASSDNGMEHR-KQRDKKLKKHSK-------YSSTDSLKSEKRKD------PKSKKKSKILKKKK 1227
            ..:.|...||. |.|:||.:..||       :.|.|...|::|::      ||.|..|....:|.
 Frog  1765 YDAKDKKPEHESKDREKKAEHESKDRDSRQEHDSRDHSSSKRREEKKRESSPKGKDSSSSSSQKV 1829

  Fly  1228 KSK 1230
            |:|
 Frog  1830 KAK 1832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snamaNP_611884.1 COG5222 3..315 CDD:227547 152/384 (40%)
DWNN 3..75 CDD:285936 44/71 (62%)
zf-CCHC_2 148..167 CDD:290419 11/18 (61%)
RING 217..260 CDD:238093 27/42 (64%)
rbbp6XP_031748649.1 COG5222 2..382 CDD:227547 153/388 (39%)
PTZ00449 <990..>1227 CDD:185628 38/236 (16%)
Agg_substance 1348..>1558 CDD:411439 33/209 (16%)
PTZ00121 <1506..1981 CDD:173412 81/338 (24%)
PRK12678 1520..>1755 CDD:237171 55/245 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7066
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 338 1.000 Inparanoid score I2329
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000125
OrthoInspector 1 1.000 - - oto103271
Panther 1 1.100 - - LDO PTHR15439
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1986
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.180

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