DRSC/TRiP Functional Genomics Resources

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Protein Alignment snama and LOC108190973

DIOPT Version :9

Sequence 1:NP_611884.1 Gene:snama / 37857 FlyBaseID:FBgn0086129 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_017212993.1 Gene:LOC108190973 / 108190973 -ID:- Length:173 Species:Danio rerio


Alignment Length:140 Identity:56/140 - (40%)
Similarity:87/140 - (62%) Gaps:18/140 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDF-DLQITNAQSKEEYKDDGFLIPK 66
            |||:|:|.|.:|::.|:||:||.|:|||:|::.|||    .| .|:|:|||:.|:|.||. ||||
Zfish     4 VHYRFQSRLTYDSLQFEGLNISAGELKRQIMRSKRL----KFCQLKISNAQTDEKYTDDA-LIPK 63

  Fly    67 NTTLIISRIP-----------IAHPTKKGWEPPAAENAFSAAPAKQDNFNMDLSKMQGTEEDKIQ 120
            ||::||.|||           :.|...: |..|:.....|....:|.....:|::.:.:||||::
Zfish    64 NTSVIIRRIPAAGLKSSNRRFVGHQAGR-WREPSPRADPSLLSLEQLLKTENLAEAKASEEDKLK 127

  Fly   121 AMMMQSTVDY 130
            |:|.||::.|
Zfish   128 AVMYQSSLCY 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snamaNP_611884.1 COG5222 3..315 CDD:227547 56/140 (40%)
DWNN 3..75 CDD:285936 38/72 (53%)
zf-CCHC_2 148..167 CDD:290419
RING 217..260 CDD:238093
LOC108190973XP_017212993.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000125
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X138
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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