DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snama and LOC100535429

DIOPT Version :10

Sequence 1:NP_611884.1 Gene:snama / 37857 FlyBaseID:FBgn0086129 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_073765170.1 Gene:LOC100535429 / 100535429 -ID:- Length:265 Species:Danio rerio


Alignment Length:224 Identity:80/224 - (35%)
Similarity:125/224 - (55%) Gaps:41/224 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITNAQSKEEYKDDGFLIPKN 67
            |||:|:|.|.:|::.|:||:||.|:|||:|::.||| |..  .|:|:|||:.|||.||. |||||
Zfish     4 VHYRFQSRLTYDSLQFEGLNISAGELKRQIMRSKRL-KFC--QLKISNAQTDEEYTDDA-LIPKN 64

  Fly    68 TTLIISRIP-----------IAHPTKKGWEPPAAENAFSAAPAKQDNFNMDLSKMQGTEEDKIQA 121
            |::||.|||           :.|...: |..|:.....|....:|.....:|::.:.:||||::|
Zfish    65 TSVIIRRIPAAGLKSSNRRFVGHQAGR-WREPSPRADPSLLSLEQLLKTENLAEAKASEEDKLKA 128

  Fly   122 MMMQSTVDYDPKTYHRIKGQSQVGEVPASYRCNKCKKSGHWIKNCPF-VGGKD--QQEVKRNTGI 183
            :|.||::.|    |...:....:| :|           ||.|::||. ||.:.  .:.::::|||
Zfish   129 VMYQSSLCY----YSSSEAMRLLG-IP-----------GHHIRHCPTNVGSRSAPHKRIRKSTGI 177

  Fly   184 PRSFR---DKPD---AAENESADFVLPAV 206
            ||||.   |.||   ...:.|..:|:|.:
Zfish   178 PRSFLLEVDDPDRKGVMIDGSGRYVIPII 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snamaNP_611884.1 COG5222 3..315 CDD:227547 80/224 (36%)
PTZ00449 <560..>778 CDD:185628
PRK12678 <1031..>1121 CDD:237171
LOC100535429XP_073765170.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.