DRSC/TRiP Functional Genomics Resources

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Protein Alignment snama and LOC100005157

DIOPT Version :9

Sequence 1:NP_611884.1 Gene:snama / 37857 FlyBaseID:FBgn0086129 Length:1231 Species:Drosophila melanogaster
Sequence 2:XP_009304173.1 Gene:LOC100005157 / 100005157 -ID:- Length:174 Species:Danio rerio


Alignment Length:139 Identity:52/139 - (37%)
Similarity:88/139 - (63%) Gaps:15/139 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDF-DLQITNAQSKEEYKDDGFLIPK 66
            |||:|:|.|.:|::.|:||:|:||:|||:|::::||    .| .|:|:..|:.|||.||..||||
Zfish     4 VHYRFQSRLTYDSLQFEGLNITVGELKRQIMRRERL----KFCQLKISKGQTDEEYTDDDALIPK 64

  Fly    67 NTTLIISRIPIA---HPTKKGWEPPAAENAFSAAPAKQDNFNMD-------LSKMQGTEEDKIQA 121
            ||::||.|:|.|   ...::.....|..:|.|:........:::       |::.:.:||||::|
Zfish    65 NTSVIIRRVPAAGLKSSNRRFVGHQAGPSAKSSQTGDSSLLSLEQLLKTENLAEAKASEEDKLKA 129

  Fly   122 MMMQSTVDY 130
            :|.||::.|
Zfish   130 VMYQSSLCY 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snamaNP_611884.1 COG5222 3..315 CDD:227547 52/139 (37%)
DWNN 3..75 CDD:285936 36/72 (50%)
zf-CCHC_2 148..167 CDD:290419
RING 217..260 CDD:238093
LOC100005157XP_009304173.1 DWNN 4..73 CDD:312352 36/72 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000125
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X138
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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