DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mlp60A and LIMA1

DIOPT Version :9

Sequence 1:NP_001137750.1 Gene:Mlp60A / 37853 FlyBaseID:FBgn0259209 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001107018.1 Gene:LIMA1 / 51474 HGNCID:24636 Length:760 Species:Homo sapiens


Alignment Length:103 Identity:35/103 - (33%)
Similarity:48/103 - (46%) Gaps:16/103 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 LSTDTGAHLNREFVPPKIPPK--APDGLGCPRCGIYVYAAEQMLARGKGYHRRCFKCVQCNKTLD 143
            ||.|:.|....|..|||...|  ||....|..|...||..|::||..:.:|..||:|..||..|.
Human   362 LSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS 426

  Fly   144 ----STLHCDGPDKDIYCRGCYAQKFGAR-----GYGH 172
                ::||     ..|||:..:.|.|.::     |:||
Human   427 LGTYASLH-----GRIYCKPHFNQLFKSKGNYDEGFGH 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mlp60ANP_001137750.1 LIM1_MLP84B_like 10..63 CDD:188788
LIM_CRP_like 108..161 CDD:188712 19/56 (34%)
LIM_CRP_like 213..266 CDD:188712
LIM 316..369 CDD:413332
LIM_CRP_like 412..465 CDD:188712
LIMA1NP_001107018.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..131
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..182
Required for interaction with NPC1L1. /evidence=ECO:0000250|UniProtKB:Q9ERG0 164..166
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..264
LIM_Eplin_alpha_beta 391..443 CDD:188869 19/56 (34%)
Required for interaction with MYO5B. /evidence=ECO:0000250|UniProtKB:Q9ERG0 494..514
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 510..710
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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