DRSC/TRiP Functional Genomics Resources

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Protein Alignment yki and ube3a

DIOPT Version :9

Sequence 1:NP_001350857.1 Gene:yki / 37851 FlyBaseID:FBgn0034970 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001007319.1 Gene:ube3a / 792398 ZFINID:ZDB-GENE-041114-190 Length:857 Species:Danio rerio


Alignment Length:263 Identity:56/263 - (21%)
Similarity:100/263 - (38%) Gaps:75/263 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 SSPASLQQNYNVRA-RSDAAAANNPN-ANPSSQQQPAGPTFPENSAQEFPSGAPASSAIDLDAMN 230
            |||...:.:.|..| ::.....||.. .:|...::.|...||||||:    ||...||.....||
Zfish    33 SSPGFQRMDNNAAAIKALELYKNNAKLCDPHPSKKGASSAFPENSAK----GAHNFSACSNGKMN 93

  Fly   231 TCMSQDIPMSMQTVH-----KKQRSYDVISPIQ-------LNRQLG-------ALPPGWEQAKTN 276
               .:|:|.:.:...     .:.:.|:::|...       |.|.:|       :|...:.:||  
Zfish    94 ---HKDLPPTREDFRDLNFLTEDKVYEILSICSETEDYSPLIRVIGRVFSSAESLVQSFRKAK-- 153

  Fly   277 DGQIYYLNHTTKSTQWEDPRIQYRQQQQILMAERIKQNDVLQTTKQTTT-STIANNLGPLPDGWE 340
                   .||             :::.:.|.|   |..|..:..|:|.: |:.|..:.|      
Zfish   154 -------QHT-------------KEELKSLQA---KDEDKDEDEKETASGSSTAMEVEP------ 189

  Fly   341 QAVTESGDLYFINHIDRTTSWNDPRMQSGLSVLDCPDNLVSSLQIEDNLCSN-----LFNDAQAI 400
            :|...|||         .:|..:..:|. |..::...::.:..::.|.|.||     .|.:|...
Zfish   190 EASASSGD---------GSSHGENNVQK-LGPVEVSVDIDAVRRVYDRLLSNEKIEAAFLNALVY 244

  Fly   401 VNP 403
            ::|
Zfish   245 LSP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ykiNP_001350857.1 HUL4 <261..>404 CDD:227354 30/156 (19%)
WW 266..295 CDD:395320 5/28 (18%)
WW 335..364 CDD:395320 5/28 (18%)
ube3aNP_001007319.1 AZUL 6..60 CDD:293166 7/26 (27%)
HECTc 505..855 CDD:238033
HECTc 532..854 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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