DRSC/TRiP Functional Genomics Resources

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Protein Alignment yki and Herc3

DIOPT Version :9

Sequence 1:NP_001350857.1 Gene:yki / 37851 FlyBaseID:FBgn0034970 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001348895.1 Gene:Herc3 / 73998 MGIID:1921248 Length:1050 Species:Mus musculus


Alignment Length:408 Identity:70/408 - (17%)
Similarity:125/408 - (30%) Gaps:145/408 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 HSRANSADS---TYDAGSQSSINIGNKASIVQQPDGQSPIAAIPQLQIQPSPQHS---------- 157
            |..|.:||.   |:...|...:.:|.:......|.....:..||..|:.....||          
Mouse   148 HCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVF 212

  Fly   158 --------RLAIHHSRARSSPASLQQNYNVRARSDAAAANNPNANPSSQQQPAGPTFPENSAQEF 214
                    :|.:...:.|.||..::.   :|.:.....:       ..::..|..|   .|...|
Mouse   213 GWGMNNAGQLGLSDEKDRESPCHVKL---LRTQKVVYIS-------CGEEHTAVLT---KSGGVF 264

  Fly   215 PSGAPASSAIDLDAMNTCMSQDIPMSMQTVHKKQRSYDVISPIQLNRQLG--------------A 265
            ..||.:...:..|::|                     |.::|.::...:|              |
Mouse   265 TFGAGSCGQLGHDSVN---------------------DEVNPRRVLELMGSEVTQIACGRQHTLA 308

  Fly   266 LPPGWEQAKTNDGQIY---------------------------YLNHTTKSTQWEDPRIQYRQQQ 303
            |.|       :.|.||                           :..|:::.:...| |.:||..:
Mouse   309 LVP-------SSGLIYAFGCGAKGQLGTGHTCNVKCPSPVKGHWAAHSSQLSARAD-RFKYRVVK 365

  Fly   304 QILMAERIKQNDVLQTTKQ---------TTTSTIANNLGPLPDG----WEQAVTESGDLYFINHI 355
            ||....  .|..||.:|.:         |...|...||  :.|.    |.|.:||..:...:|.:
Mouse   366 QIFSGG--DQTFVLCSTYENSSPAVDFRTVNQTHYTNL--INDETIAVWRQKLTEHNNANTVNGV 426

  Fly   356 DRTTS----WN--------DPRMQSGLSVLDCPDNLVSSLQI---------EDNLCSNLFNDAQA 399
            .:..|    ||        |...::...:   |...::|.:|         ...:...:.|..::
Mouse   427 VQILSSAACWNGSFLEKKIDEHFKTSPKI---PGIDLNSTRILFEKLMHSQHSMILEQILNSFES 488

  Fly   400 IVNPPSSHKPDDLEWYKI 417
            .:.|..|..|.|:|..:|
Mouse   489 CLIPQLSSSPPDVEAMRI 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ykiNP_001350857.1 HUL4 <261..>404 CDD:227354 36/217 (17%)
WW 266..295 CDD:395320 6/55 (11%)
WW 335..364 CDD:395320 9/44 (20%)
Herc3NP_001348895.1 ATS1 2..331 CDD:227511 35/223 (16%)
RCC1 313..377 CDD:366085 11/66 (17%)
HECTc 702..1048 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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