DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL39 and QARS1

DIOPT Version :9

Sequence 1:NP_477314.1 Gene:RpL39 / 37849 FlyBaseID:FBgn0023170 Length:51 Species:Drosophila melanogaster
Sequence 2:NP_005042.1 Gene:QARS1 / 5859 HGNCID:9751 Length:775 Species:Homo sapiens


Alignment Length:22 Identity:7/22 - (31%)
Similarity:11/22 - (50%) Gaps:0/22 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AHKSFRIKQKLAKKLKQNRSVP 24
            |.|....:.:|:..|:..||.|
Human    77 ASKKIHTEPQLSAALEYVRSHP 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL39NP_477314.1 Ribosomal_L39 <20..50 CDD:395670 3/5 (60%)
QARS1NP_005042.1 PLN02859 6..774 CDD:178450 7/22 (32%)
tRNA_synt_1c_R1 10..162 CDD:282424 7/22 (32%)
tRNA_synt_1c_R2 165..256 CDD:282423
GlnRS_core 263..567 CDD:185676
'HIGH' region. /evidence=ECO:0000305|PubMed:26869582 270..280
'KMSKS' region. /evidence=ECO:0000305|PubMed:26869582 493..497
tRNA-synt_1c_C 565..752 CDD:281883
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.