DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL39 and Eprs

DIOPT Version :9

Sequence 1:NP_477314.1 Gene:RpL39 / 37849 FlyBaseID:FBgn0023170 Length:51 Species:Drosophila melanogaster
Sequence 2:XP_006250487.1 Gene:Eprs / 289352 RGDID:1310952 Length:1519 Species:Rattus norvegicus


Alignment Length:31 Identity:9/31 - (29%)
Similarity:15/31 - (48%) Gaps:9/31 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AKKLKQNRSVP----QWVRLRTGNTIRYNAK 40
            ||.::.:|.:|    ||.     |.:|:..|
  Rat  1138 AKWVQSHRDLPIRLNQWC-----NVVRWEFK 1163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL39NP_477314.1 Ribosomal_L39 <20..50 CDD:395670 7/25 (28%)
EprsXP_006250487.1 PLN02907 6..718 CDD:215492
GST_C_GluProRS_N 74..157 CDD:198342
tRNA-synt_1c 197..498 CDD:279135
tRNA-synt_1c_C 511..688 CDD:281883
WHEP-TRS 760..812 CDD:278865
WEPRS_RNA 833..882 CDD:238473
WHEP-TRS 911..962 CDD:278865
PRK08661 1026..1519 CDD:236327 9/31 (29%)
ProRS_core_arch_euk 1030..1293 CDD:238401 9/31 (29%)
ProRS_anticodon_zinc 1299..1519 CDD:238439
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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