DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL39 and ears-1

DIOPT Version :10

Sequence 1:NP_477314.1 Gene:RpL39 / 37849 FlyBaseID:FBgn0023170 Length:51 Species:Drosophila melanogaster
Sequence 2:NP_001366832.1 Gene:ears-1 / 172904 WormBaseID:WBGene00001337 Length:1149 Species:Caenorhabditis elegans


Alignment Length:18 Identity:8/18 - (44%)
Similarity:11/18 - (61%) Gaps:2/18 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KSFRIKQKLAK--KLKQN 20
            ||...|..:||  :||:|
 Worm   965 KSQETKDAIAKLLELKKN 982

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL39NP_477314.1 Ribosomal_L39 <20..50 CDD:425894 1/1 (100%)
ears-1NP_001366832.1 PLN02907 6..708 CDD:215492
S15_NS1_EPRS_RNA-bind 733..782 CDD:469733
WEPRS_RNA 804..853 CDD:238473
WEPRS_RNA 878..927 CDD:238473
WEPRS_RNA 948..994 CDD:238473 8/18 (44%)
WEPRS_RNA 1017..1064 CDD:238473
WEPRS_RNA 1089..1138 CDD:238473
Blue background indicates that the domain is not in the aligned region.

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