DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sei and Cnga1

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_445949.2 Gene:Cnga1 / 85259 RGDID:621815 Length:683 Species:Rattus norvegicus


Alignment Length:784 Identity:168/784 - (21%)
Similarity:314/784 - (40%) Gaps:176/784 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ASMFDDKKESLARFPKNVSDHNTLVYHKFLRTRPTNDDEALKLKAGGKSKERPGTKITADCFFSP 148
            :|..|:...||:...:|  :.:....:.:.|..|:..:..|           |||.         
  Rat    36 SSFSDNDNGSLSEESEN--EDSLFRSNSYRRRGPSQREHYL-----------PGTM--------- 78

  Fly   149 LLFKINNKRECLKKVKPMKGENAVETNGIPLESKPSQHKKQKSFKKCIKCDKKKLYIKNYQVSAR 213
            .||.:||...                    .:..|.:.||:|..||. |.|.||...|       
  Rat    79 ALFNVNNSSN--------------------KDQDPKEKKKKKKEKKS-KADDKKESKK------- 115

  Fly   214 RECDLLCSYDPLRKNNADLFQTHKGTSYECMFKNLKYNQAEKPTDNVMGNSYDDMLDKEALLGSK 278
                     ||.:|...:              |..:..:.|||              ||.....|
  Rat   116 ---------DPEKKKKKE--------------KEKEKKKEEKP--------------KEKKEEEK 143

  Fly   279 SEPKGQDPNDMITSLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVMYTAIFTPYVAA 343
            .|....||:       ||:         ||:             |.:.|.:.|||.  :|..:|.
  Rat   144 KEVVVIDPS-------GNM---------YYN-------------WLFCITLPVMYN--WTMIIAR 177

  Fly   344 FLLGEQDYQRRNSKYINSDPI---VIIDLIVDVTFIVDIIINFRTTFVNSQDEVVSHPGRIAVHY 405
            ....|          :.||.:   :|.|.:.||.::.|:.:..||.:: .|..:|....::...|
  Rat   178 ACFDE----------LQSDYLEYWLIFDYVSDVVYLADMFVRTRTGYL-EQGLLVKDKLKLIEKY 231

  Fly   406 LSG-WFLIDLVAAVPFDLLL--VGSDTDETTTLIGLLKTARLLRLVRVARKIDRY------SEYG 461
            .:. .|.:|:::.:|.|||.  .|.:..|          .||.||:|::|..:.:      :.|.
  Rat   232 KANLQFKLDVLSVIPTDLLYFKFGWNYPE----------IRLNRLLRISRMFEFFQRTETRTNYP 286

  Fly   462 AAVLIL-LMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDIQEPYFDNRTGGPSIKSR 525
            ....|. |:...::|.||.||::|:|   .|:|...|..|:..   |:.:|.|..      :..:
  Rat   287 NIFRISNLVMYIVIIIHWNACVYYSI---SKAIGFGNDTWVYP---DVNDPEFGR------LARK 339

  Fly   526 YITALYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHT 590
            |:.:||::..:||::| ....|..|:|..|.:...|:|.|::|:|.||:.::|..:.:..|.:.:
  Rat   340 YVYSLYWSTLTLTTIG-ETPPPVLDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQS 403

  Fly   591 QMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTTC 655
            ::..:::::.|..:...:.:|:.::|.:.||....:|...:|:..|:.|:|:|.::::...|...
  Rat   404 RVDAIKQYMNFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKV 468

  Fly   656 AAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNI---VVLGKND 717
            ..|::...|.|....||.:.....|||.:..:||:...:|.|..|.:.:.....|   |||....
  Rat   469 RIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLAVVADDGITQFVVLSDGS 533

  Fly   718 IFGENPCIYPTVGKS----NGVVRALTYCDIHKLHRDDLLDVLDSYPE---FLESFVSNLVITYN 775
            .|||...:.....|:    ...::::.|.|:..|.:|||::.|..||:   .||.....:::...
  Rat   534 YFGEISILNIKGSKAGNRRTANIKSIGYSDLFCLSKDDLMEALTEYPDAKTMLEEKGRQILMKDG 598

  Fly   776 MRDDEHSGVDIKHRYLRAKSSDKMRSSPDIPSIRIVGLRYKKQNVNTSVHKVKNDNSRDLNIFIE 840
            :.|...:.:....:.|..|.: :|..|.|:...|...:..:.:::...:.:......:.|...||
  Rat   599 LLDINIANLGSDPKDLEEKVT-RMEGSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIE 662

  Fly   841 NEIA 844
            .|.:
  Rat   663 TEFS 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 61/235 (26%)
Ion_trans_2 <526..580 CDD:285168 18/53 (34%)
CAP_ED 657..767 CDD:237999 32/119 (27%)
Crp 666..>766 CDD:223736 30/109 (28%)
Cnga1NP_445949.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..144 35/194 (18%)
Ion_trans 156..398 CDD:395416 71/290 (24%)
P-helix. /evidence=ECO:0000250|UniProtKB:Q00194 341..351 2/9 (22%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:Q00194 352..360 2/8 (25%)
C-linker. /evidence=ECO:0000250|UniProtKB:Q00194 393..475 14/81 (17%)
CAP_ED 470..586 CDD:237999 30/115 (26%)
Cyclic nucleotide-binding domain (CNBD). /evidence=ECO:0000250|UniProtKB:Q00194 476..603 32/126 (25%)
CLZ 586..655 CDD:406832 9/69 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338748
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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