DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and kcnh2a

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_021336554.1 Gene:kcnh2a / 563802 ZFINID:ZDB-GENE-070912-699 Length:1254 Species:Danio rerio


Alignment Length:914 Identity:415/914 - (45%)
Similarity:540/914 - (59%) Gaps:159/914 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KPPVKEFKRNCPAKSNKFVERELF-----SLMC--NLNKIEKKQVFVSDILINASMFDDKKESLA 95
            :|.|.:..:.......:.||..|:     .|.|  ::..::.:...|...::|..:.|.:...|.
Zfish    76 RPAVAQMAKALLGSEERKVEISLYRKDGVCLPCLVDVVPVKNEDGLVIMFILNFELADQQDRPLD 140

  Fly    96 RFP-KNVSDHNTLVYHKFLRTRPTNDDEALKLKAGGKSKERPGTKITADCFFSPLLFKINNKREC 159
            ..| :::::.|.:.:....|.|      .|:|..                   |||..::..::.
Zfish   141 SSPGRDINNKNPIPWLSKARRR------RLRLPL-------------------PLLHSLSGSKQS 180

  Fly   160 LKK------VKPM--------------------------------KGENAVETNGIPLE------ 180
            |.:      ::||                                |.:...|:...|.|      
Zfish   181 LHEDTEKGFMQPMPHMGHESVALDKLLSLPERSALGGSQLLFWEDKAQTESESELRPSEVSPPLP 245

  Fly   181 -----SKPSQHK--KQKSFKKCIKCDKKKLYIKNYQVSARRECDLLCSYDPLRKNNA---DLFQT 235
                 |.|..|.  .:.|...|             .::..|.|:.||...|....|.   |....
Zfish   246 QGFSQSSPRLHNLTSEASPSSC-------------SMAHSRSCESLCGMRPSPSTNDFNWDRKLP 297

  Fly   236 HKGTSYECMFKNLKYNQAEKPTD-----------NVMGNSYDDMLDKEALLGSKSEPKGQ----- 284
            .:.:|...|.:......|...:|           .:..|..|  :..:||:   :.|.|:     
Zfish   298 VRPSSTGAMHRKASLQNATSDSDLIRLRSSGRGTQISHNLID--MKPDALI---AVPTGEIDIIA 357

  Fly   285 -----DPNDMIT-------SLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVMYTAIF 337
                 |....:|       |||.::|.:.|||....||||:||||||||||||:||:||:|||||
Zfish   358 PCKLIDRTHNVTEKVTQVLSLGADVLPEYKLQAPRIHKWTILHYSPFKAVWDWVILLLVIYTAIF 422

  Fly   338 TPYVAAFLLGEQDYQRRNSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEVVSHPGRIA 402
            |||.|||||.:::.:.......:...:.::|||||:.|:|||:||||||:|||.|||||.|||||
Zfish   423 TPYSAAFLLSDEEEEVIQRCGYSCSTLNVVDLIVDIMFVVDIVINFRTTYVNSNDEVVSQPGRIA 487

  Fly   403 VHYLSGWFLIDLVAAVPFDLLLVGSDTDET--TTLIGLLKTARLLRLVRVARKIDRYSEYGAAVL 465
            |||..||||||:|||:|||||:..|:.:.|  |||||||||||||||||||||:|||||||||||
Zfish   488 VHYFKGWFLIDMVAAIPFDLLIYRSEEETTTSTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVL 552

  Fly   466 ILLMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDIQEPYFDN-RTGGPSIKSRYITA 529
            .|||.||.|||||||||||||||.|:|..|: |||||||...:.:||..: |..|||||.:|:||
Zfish   553 FLLMCTFALIAHWLACIWYAIGNVERSGPSR-IGWLNSLGDQLGKPYNSSVRGSGPSIKDKYVTA 616

  Fly   530 LYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLR 594
            |||||:||||||||||:|||::||.|:|||||:|:||||||||||||||||||||||||||||||
Zfish   617 LYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGALMYASIFGNVSAIIQRLYSGTARYHTQMLR 681

  Fly   595 VREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTTCAAFS 659
            ||||||||||||||||||||||||||:||||||||::||||||||||||||||||.||.:|.||.
Zfish   682 VREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRTLLQSCKAFK 746

  Fly   660 EASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNIVV--LGKNDIFGEN 722
            .:|.|||||.::|||||||||||.|||.|||:::||||:||||||.: |::||  |||||||||.
Zfish   747 GSSKGCLRALAMKFKTTHAPPGDTLVHAGDVISALYFISRGSIEILK-GDVVVAILGKNDIFGEP 810

  Fly   723 PCIYPTVGKSNGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYNMR---------- 777
            ...|...|||:..||||||||:||:||||:|:||:.||||.:.|.|||.||:|:|          
Zfish   811 INSYARPGKSSADVRALTYCDLHKIHRDDVLEVLEMYPEFSDYFWSNLEITFNLRDTNTKAGSMS 875

  Fly   778 ----DDEHSGVDIKHR----YLRAKSSDKMRSSPDIPSIRIVGLRYKKQNVNTSVHKVKNDNSRD 834
                |.::.|:|...|    :.::|.:...|:..:....|:..:.::.| .:...|:.:....|.
Zfish   876 SDPDDSDNGGLDHHTRRAKLFFQSKRNSISRADTERTEDRLNRMTFRTQ-TSGKQHENRQTAHRS 939

  Fly   835 LNIF 838
            .:||
Zfish   940 SDIF 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 164/225 (73%)
Ion_trans_2 <526..580 CDD:285168 44/53 (83%)
CAP_ED 657..767 CDD:237999 72/111 (65%)
Crp 666..>766 CDD:223736 67/101 (66%)
kcnh2aXP_021336554.1 PAS_9 29..130 CDD:315989 9/53 (17%)
Ion_trans 407..670 CDD:306908 185/263 (70%)
CAP_ED 744..855 CDD:237999 72/111 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578342
Domainoid 1 1.000 381 1.000 Domainoid score I794
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 594 1.000 Inparanoid score I938
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 1 1.000 - - otm25474
orthoMCL 1 0.900 - - OOG6_100845
Panther 1 1.100 - - LDO PTHR10217
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5087
SonicParanoid 1 1.000 - - X71
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.780

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