DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and Kcnh4

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_001074663.1 Gene:Kcnh4 / 380728 MGIID:2156184 Length:1018 Species:Mus musculus


Alignment Length:736 Identity:276/736 - (37%)
Similarity:400/736 - (54%) Gaps:116/736 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 KFLRTRPTNDDEALKLKAGGKSKERPGTKITADCFFSPLLFKINNKRECLKKVKPMKGE------ 169
            :||....|::....:|:...:..:...|:|   ||:.    |..:...||..:.|:|.|      
Mouse    68 RFLYGPETSEPALQRLQKALEGHQEHRTEI---CFYR----KDGSAFWCLLDMMPIKNEMGEVVL 125

  Fly   170 -----NAVETNGIPLESKPSQHKKQKSFKKCIKCDKKKLYIKNYQVSARRECDLLCSYDPLRKNN 229
                 ..:..:|.|....|..|..                 .|::.|..|           |..:
Mouse   126 FLFSFKDISQSGGPGLGSPGIHGD-----------------NNHENSLGR-----------RGTS 162

  Fly   230 ADLFQTHKGTSYECMFKNLKYNQAEKPTDNVMGNSYDDMLDKEALLGSKSEPKGQDPNDMITSLG 294
            :.|..|.:  ....:...|..:...:...:|..||            :..|||...|...:.|:|
Mouse   163 SRLRSTKR--QNRTVLHRLTGHFGRRGQSSVKANS------------NLFEPKPSVPEYKVASVG 213

  Fly   295 GNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVMYTAIFTPYVAAFLLGEQDYQRRNSKYI 359
            |:..|             |||||..|||||.:||:...|.|:..||...| .|:.|..      |
Mouse   214 GSRCL-------------LLHYSIPKAVWDGLILLATFYVAVTVPYNVCF-AGDDDTP------I 258

  Fly   360 NSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEVVSHPGRIAVHYLSGWFLIDLVAAVPFDLLL 424
            .|...::.|:.|::.||:|||:|||||:|:...:|:|.|..|.:|||:.||.:||:||:|||||.
Mouse   259 TSRHTLVSDIAVEMLFILDIILNFRTTYVSQSGQVISAPRSIGLHYLATWFFVDLIAALPFDLLY 323

  Fly   425 VGSDTDETTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLILLMATFILIAHWLACIWYAIGNA 489
            |.:.|  .|:|:.||||.|||||:|:.:|::|||:..|.||.|||:.|.|:|||:||:||.||..
Mouse   324 VFNIT--VTSLVHLLKTVRLLRLLRLLQKLERYSQCSAVVLTLLMSVFALLAHWMACVWYVIGRR 386

  Fly   490 EKSIASK---NIGWLNSLAYDIQEPYFDNRTGGPSIKSRYITALYFTFTSLTSVGFGNVAPNTDA 551
            |......   :||||:.|...::|||.:...||||.:|.||.|||||.:||||||||||..||||
Mouse   387 EMEANDPLLWDIGWLHELGKRLEEPYVNGSAGGPSRRSAYIAALYFTLSSLTSVGFGNVCANTDA 451

  Fly   552 EKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYF 616
            ||.|:||.||:|:||:|.:||||:|||||:||..:.||::|..:::|||.|::|.||:||:.|||
Mouse   452 EKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYF 516

  Fly   617 QHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTTCAAFSEASPGCLRAFSLKFKTTHAPPG 681
            |..|...:|||.|.||:.||:.|:|||.:||||::| ....|..||.|||||.||..||:...||
Mouse   517 QTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGAASRGCLRALSLHIKTSFCAPG 580

  Fly   682 DILVHRGDVLTSLYFIARGSIEIQRAGNIV-VLGKNDIFGENPCIYPTVG-------------KS 732
            :.|:.|||.|.:.|::..||:|:.|...:: :|||.|:.|.:   .|.:|             |:
Mouse   581 EYLLRRGDALQAHYYVCSGSLEVLRDNMVLAILGKGDLIGAD---IPELGQEPGSGAGPSCVLKT 642

  Fly   733 NGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLV--ITYNMRD-DEHSGVDIKHRYLRA- 793
            :..|:|||||.:.:|....|.:||..|||:..:|.:.|.  :|:|:|. .|::|:.   |:.|: 
Mouse   643 SADVKALTYCGLQQLSSRGLAEVLRLYPEYAAAFRAGLPRDLTFNLRQGSENNGLG---RFSRSP 704

  Fly   794 ----KSSDKMRSSPD--IPSI 808
                ..||.:.||.|  :|||
Mouse   705 RLSQARSDTLGSSSDKTLPSI 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 122/225 (54%)
Ion_trans_2 <526..580 CDD:285168 39/53 (74%)
CAP_ED 657..767 CDD:237999 45/123 (37%)
Crp 666..>766 CDD:223736 40/113 (35%)
Kcnh4NP_001074663.1 PAS_9 29..135 CDD:290162 14/73 (19%)
PAS 42..133 CDD:238075 14/71 (20%)
Ion_trans 244..486 CDD:278921 130/250 (52%)
Ion_trans_2 <426..480 CDD:285168 39/53 (74%)
CAP_ED 556..676 CDD:237999 45/122 (37%)
bZIP <864..902 CDD:304365
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835149
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X71
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.740

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