DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and KCNH2

DIOPT Version :10

Sequence 1:NP_476713.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_047276304.1 Gene:KCNH2 / 3757 HGNCID:6251 Length:1185 Species:Homo sapiens


Alignment Length:523 Identity:359/523 - (68%)
Similarity:423/523 - (80%) Gaps:27/523 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 DKEALLGSKSEPKGQDPNDMIT---SLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILV 331
            |:| ::..|.:.:..:..:.:|   |||.::|.:.|||....|:||:||||||||||||:||:||
Human   381 DRE-IIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLV 444

  Fly   332 MYTAIFTPYVAAFLLGEQD---------YQRRNSKYINSDPIVIIDLIVDVTFIVDIIINFRTTF 387
            :|||:||||.|||||.|.:         |.        ..|:.::|||||:.|||||:||||||:
Human   445 IYTAVFTPYSAAFLLKETEEGPPATECGYA--------CQPLAVVDLIVDIMFIVDILINFRTTY 501

  Fly   388 VNSQDEVVSHPGRIAVHYLSGWFLIDLVAAVPFDLLLVGSDTDETTTLIGLLKTARLLRLVRVAR 452
            ||:.:|||||||||||||..||||||:|||:|||||:.||.::|   ||||||||||||||||||
Human   502 VNANEEVVSHPGRIAVHYFKGWFLIDMVAAIPFDLLIFGSGSEE---LIGLLKTARLLRLVRVAR 563

  Fly   453 KIDRYSEYGAAVLILLMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDIQEPYFDNRT 517
            |:|||||||||||.|||.||.|||||||||||||||.|:......||||::|...|.:||..:..
Human   564 KLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGL 628

  Fly   518 GGPSIKSRYITALYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLY 582
            ||||||.:|:|||||||:||||||||||:|||::||.|:|||||:||||||||||||||||||||
Human   629 GGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLY 693

  Fly   583 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHL 647
            ||||||||||||||||||||||||||||||||||||||:||||||||::||||||||||||||||
Human   694 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHL 758

  Fly   648 NRKLLTTCAAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNIVV 712
            ||.||..|..|..|:.|||||.::|||||||||||.|||.||:||:||||:||||||.| |::||
Human   759 NRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILR-GDVVV 822

  Fly   713 --LGKNDIFGENPCIYPTVGKSNGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYN 775
              |||||||||...:|...|||||.||||||||:||:||||||:|||.||||.:.|.|:|.||:|
Human   823 AILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFN 887

  Fly   776 MRD 778
            :||
Human   888 LRD 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_476713.1 Ion_trans 322..583 CDD:459842 184/269 (68%)
CAP_ED 657..767 CDD:237999 77/111 (69%)
KCNH2XP_047276304.1 PAS_9 64..156 CDD:463873
Ion_trans 435..694 CDD:459842 184/269 (68%)
CAP_ED 768..879 CDD:237999 77/111 (69%)
Blue background indicates that the domain is not in the aligned region.

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